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The map label for this gene is ycfQ [H]

Identifier: 86751365

GI number: 86751365

Start: 4846947

End: 4847627

Strand: Reverse

Name: ycfQ [H]

Synonym: RPB_4262

Alternate gene names: 86751365

Gene position: 4847627-4846947 (Counterclockwise)

Preceding gene: 86751367

Following gene: 86751364

Centisome position: 90.92

GC content: 70.93

Gene sequence:

>681_bases
ATGGTACAAAAATCACGCGCGCCGTCGCGCGCCGCCGCCAAGCCGAAATCGCCGGCAATGCCCGACGCCGCGCCGGCGCC
GAAGAAGCGCGGCCGGCCGCGCAGCTACGAGCCCGAGCAGGCACTCGGCCAGGCGCTCGATCTGTTCCGGCAGAGCGGCT
TTGCGGCGACGTCGCTGGACGAATTGTCCGCCGCCACCGGCCTCAACCGGCCGAGCCTGTACGGCGCGTTCGGCGACAAG
CGCGAGCTCTACATCAAGAGTTTCGCGCGCTATCGCTCGGACGCCCGCGCCCGGATCACCGAGGCCATCGCCGGCGAGGC
GCCGGTGCGGCAGCGGCTGAAGCGGCTTTATGACGCCACGCTCGACATTTACCTGTCGGGCGAAAATGGCCCACGCGGCT
GCTTCACGGTGATGACCGCGGCCTCCGAGGCGATGGCCGATCCGGAGATCCGCGCGATGGTGCAGGACACGCTCGGTGAA
CTCGACAGGGCCTTCGCCGGCCTGCTGCGTCAGGCGCAACAGCAGGGCGAGCTGCCGTCCTCCGCCGATCCGCAGTTGCT
CGGCCAACTCGCGGCTGCGACCGTCCATACGCTGTCGGTCCGCGCCCGCGCCGGCACGCCGCGCCCGGCGCTGGACCAGA
TCGCGGACGCGGCGATCGAGTTGATCTGCGGCCCGGCCTGA

Upstream 100 bases:

>100_bases
ATCGGAACCTCCCTCGGGTGGCGGCCGTTCGCGAGCGGCCGCGAGTTGATTTTCATACCGTCTCGCATAATATAAATCTG
GTCAAGGAATTTAATGCGAT

Downstream 100 bases:

>100_bases
CGGCGAAAATATCGCCGGCGGCTGTCGGGTGCGGCCGACGCCGTTCGTCCTTCGCGGGTGAGCCATCACCGAGGACGCCA
CCATGACCGAGCCTGCCATC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFRQSGFAATSLDELSAATGLNRPSLYGAFGDK
RELYIKSFARYRSDARARITEAIAGEAPVRQRLKRLYDATLDIYLSGENGPRGCFTVMTAASEAMADPEIRAMVQDTLGE
LDRAFAGLLRQAQQQGELPSSADPQLLGQLAAATVHTLSVRARAGTPRPALDQIADAAIELICGPA

Sequences:

>Translated_226_residues
MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFRQSGFAATSLDELSAATGLNRPSLYGAFGDK
RELYIKSFARYRSDARARITEAIAGEAPVRQRLKRLYDATLDIYLSGENGPRGCFTVMTAASEAMADPEIRAMVQDTLGE
LDRAFAGLLRQAQQQGELPSSADPQLLGQLAAATVHTLSVRARAGTPRPALDQIADAAIELICGPA
>Mature_226_residues
MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFRQSGFAATSLDELSAATGLNRPSLYGAFGDK
RELYIKSFARYRSDARARITEAIAGEAPVRQRLKRLYDATLDIYLSGENGPRGCFTVMTAASEAMADPEIRAMVQDTLGE
LDRAFAGLLRQAQQQGELPSSADPQLLGQLAAATVHTLSVRARAGTPRPALDQIADAAIELICGPA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=196, Percent_Identity=30.6122448979592, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082397, Length=121, Percent_Identity=33.8842975206612, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24179; Mature: 24179

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFRQSGFAATSLD
CCCCCCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELSAATGLNRPSLYGAFGDKRELYIKSFARYRSDARARITEAIAGEAPVRQRLKRLYDAT
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LDIYLSGENGPRGCFTVMTAASEAMADPEIRAMVQDTLGELDRAFAGLLRQAQQQGELPS
EEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SADPQLLGQLAAATVHTLSVRARAGTPRPALDQIADAAIELICGPA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFRQSGFAATSLD
CCCCCCCCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
ELSAATGLNRPSLYGAFGDKRELYIKSFARYRSDARARITEAIAGEAPVRQRLKRLYDAT
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LDIYLSGENGPRGCFTVMTAASEAMADPEIRAMVQDTLGELDRAFAGLLRQAQQQGELPS
EEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SADPQLLGQLAAATVHTLSVRARAGTPRPALDQIADAAIELICGPA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]