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The map label for this gene is glpR [H]

Identifier: 86751324

GI number: 86751324

Start: 4791697

End: 4792551

Strand: Reverse

Name: glpR [H]

Synonym: RPB_4218

Alternate gene names: 86751324

Gene position: 4792551-4791697 (Counterclockwise)

Preceding gene: 86751325

Following gene: 86751323

Centisome position: 89.89

GC content: 65.5

Gene sequence:

>855_bases
TTGACCTGCGGCGCGAACGCTCGCACGATGGAGCAAATCGCCTCGGGTGTTCGCGTGACTGCTCTGAGCCATCGCCAATC
GGAAATTCTCAATCTGGCCCGCGCCTCCGGACGGGTGATGGTGGACGATCTCGCCCGCCGCTTCGACGTCTCGGCACAGA
CCATCCGCAAGGATCTCAATGACCTGTGCGACCAGCGCTCGCTGACCCGCATTCACGGCGGCGCCATCATCGCCTCCGGG
GTCGAGAATCTCGCCTATGAGGCGCGCCGCTTCGTCGCCGCCGAGGAAAAACGGGCGATCGGCGTTGCGGCGGCCTCGCA
GATCCCCGACGGCTGCTCGCTGTTCATCAACATCGGCACGACGACGGAGGAGGTCGCGAGCGCCCTGACCTCGCACCAGG
ATCTGCTAGTGATCACCAACAACCTCAACGTCGCGATGCTGCTGTACAAATATCCCCGGATCGAGGTCATCGTCGCCGGC
GGCACCGTGCGTCGCTCCGACGGCGCGGTCATCGGCTCGGCGGCGATCGGCCTGATCGGCCAGTTCAAGGTCGACTACGC
GATCATCGGCGCCTCGGCGATCGACGAGGAGGGCGCCTTGCTCGATTTCGACTATCGCGAGGTGCAGGCGTCGCAGGCGA
TCATCGCCAACGCCCGCAGCGTGATGCTGGTCGCCGATTCGACCAAGTTGCGGCGTAGCGCGCCGGTCCGGATCGCGCAT
CTCAGCCAGATCCAGACCTTCGTCACCGACGAGGCGCTGCCGCCGGCGCTGCAGAGCATCTGCGATACGCGCGGTATCGA
AGTGATTGCGGCGTTGCCCAAGCGCGCCGACGATCTCGATGAGAGCGCTGCCTAG

Upstream 100 bases:

>100_bases
GCGACTATTTCGAGATCCGGCCCGACGCGATGTTCGAGATGCCGCGCCCCGCCTGACGCGCTGCAGCAATGCCTGTCGAC
GCCGCCTCCGCCCAGCCGAA

Downstream 100 bases:

>100_bases
AGCTTTTCCGGTTCTGATGGAATCAGAACCGGAGCCCTAGATTCTTGATTTGACGCGTTTTCTCTACGCGTACCGGTATC
CACTTCGCTCGAAAACGCTA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLNDLCDQRSLTRIHGGAIIASG
VENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGTTTEEVASALTSHQDLLVITNNLNVAMLLYKYPRIEVIVAG
GTVRRSDGAVIGSAAIGLIGQFKVDYAIIGASAIDEEGALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAH
LSQIQTFVTDEALPPALQSICDTRGIEVIAALPKRADDLDESAA

Sequences:

>Translated_284_residues
MTCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLNDLCDQRSLTRIHGGAIIASG
VENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGTTTEEVASALTSHQDLLVITNNLNVAMLLYKYPRIEVIVAG
GTVRRSDGAVIGSAAIGLIGQFKVDYAIIGASAIDEEGALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAH
LSQIQTFVTDEALPPALQSICDTRGIEVIAALPKRADDLDESAA
>Mature_283_residues
TCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLNDLCDQRSLTRIHGGAIIASGV
ENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGTTTEEVASALTSHQDLLVITNNLNVAMLLYKYPRIEVIVAGG
TVRRSDGAVIGSAAIGLIGQFKVDYAIIGASAIDEEGALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAHL
SQIQTFVTDEALPPALQSICDTRGIEVIAALPKRADDLDESAA

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=250, Percent_Identity=44, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1789829, Length=242, Percent_Identity=43.801652892562, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1789059, Length=247, Percent_Identity=29.1497975708502, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=30.1960784313725, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI226510968, Length=231, Percent_Identity=30.3030303030303, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1788069, Length=234, Percent_Identity=26.4957264957265, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790753, Length=213, Percent_Identity=29.1079812206573, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=26.9565217391304, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=27.0386266094421, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787063, Length=229, Percent_Identity=24.0174672489083, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30347; Mature: 30216

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLN
CCCCCCHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHH
DLCDQRSLTRIHGGAIIASGVENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGT
HHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEEEECCC
TTEEVASALTSHQDLLVITNNLNVAMLLYKYPRIEVIVAGGTVRRSDGAVIGSAAIGLIG
CHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCEEEEEECCEEECCCCCEEHHHHHHHHH
QFKVDYAIIGASAIDEEGALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAH
HEEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEHHH
LSQIQTFVTDEALPPALQSICDTRGIEVIAALPKRADDLDESAA
HHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDVSAQTIRKDLN
CCCCCHHHHHHHHCCEEEEEEHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHH
DLCDQRSLTRIHGGAIIASGVENLAYEARRFVAAEEKRAIGVAAASQIPDGCSLFINIGT
HHHCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCEEEEEECCC
TTEEVASALTSHQDLLVITNNLNVAMLLYKYPRIEVIVAGGTVRRSDGAVIGSAAIGLIG
CHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCEEEEEECCEEECCCCCEEHHHHHHHHH
QFKVDYAIIGASAIDEEGALLDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAH
HEEEEEEEEECCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEHHH
LSQIQTFVTDEALPPALQSICDTRGIEVIAALPKRADDLDESAA
HHHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8752340; 10984043 [H]