Click here to switch to the map view.

The map label for this gene is yfiH [C]

Identifier: 86751273

GI number: 86751273

Start: 4737590

End: 4738393

Strand: Direct

Name: yfiH [C]

Synonym: RPB_4166

Alternate gene names: 86751273

Gene position: 4737590-4738393 (Clockwise)

Preceding gene: 86751272

Following gene: 86751274

Centisome position: 88.86

GC content: 71.39

Gene sequence:

>804_bases
ATGACGATCGCCTCGCAGCGGCTCGCCGCCGTGCCCGGCCTGCGCCACGCCTTCTTCAGCCGCGCCGGCGGCGTGTCGCA
GGGCATCTATGCCGGCCTCAATGGCGGCATCGGCTCGAACGACGATCCTGCGCATGTCGCCGAGAACCGGCGGCGGATGG
CGCAGACGATGGGGGTGCCGCCGGAGCGCTTCCTCACCGTGTATCAGGTGCATTCGCCCGACGTCGCGGTGGCGCAGGCG
CCGTGGGACAACGCCGCGCGGCCCAAGGCCGATGCGATGGTCACCGCCACGCCGGGGCTGGCGCTCGGCGTCACCGCGGC
CGATTGCGGGCCGGTGCTGTTCGCCGACCCGACCGCGCGGGTGATCGGCGCCGCCCATGCCGGCTGGAAGGGCGCGCTGA
CCGGCGTGCTGGAAGCCACGCTCGATTCCATGGAAGGGCTCGGCGCCGCGCGCGGCCGCGTCATTGCGGCGATCGGTCCT
CTGATCCGCCAGCCGAGCTACGAGGTCGGCGACGAATTCGTCGCGCGCTTCGCCGCGGCCGACGCCGATTACGTCCGGTT
CTTCATCCCCGCGGCGCGGCCTGGACACGCGATGTTCGACCTCGGCGGTTTTATCCGGATGCGGCTGGAGAATGCCGGCG
TGGCGGCGATCGACGACACCGGTATCGACACCTATCCGGACGAGAACTTCTTCAGCTACCGCCGCTCGGTCCACCGCAGC
GAGCCCGATTACGGCCGCCAGATCCACGCCATCGTGCTGGAGCCGTCGGCGCAGGACGCGGCGGCCCTGCGGCCGCAAAA
GTGA

Upstream 100 bases:

>100_bases
TGGGCGCGATGTTCAAGGTGATCGGCGTTTCGGATCCGAGCATCACCTCGCTGGTGGCGCTGAGCGACGACGCCGAACGC
GCCGCGGAGGGACAAAAGGC

Downstream 100 bases:

>100_bases
ACGGCGATTAACCAAACTCGTTTACGAACAGACCCGCGGCCCGACCACCGATCTCAGTCCAAATTACTGAAAAATTTCAT
AGATTTTGAACGGCGCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MTIASQRLAAVPGLRHAFFSRAGGVSQGIYAGLNGGIGSNDDPAHVAENRRRMAQTMGVPPERFLTVYQVHSPDVAVAQA
PWDNAARPKADAMVTATPGLALGVTAADCGPVLFADPTARVIGAAHAGWKGALTGVLEATLDSMEGLGAARGRVIAAIGP
LIRQPSYEVGDEFVARFAAADADYVRFFIPAARPGHAMFDLGGFIRMRLENAGVAAIDDTGIDTYPDENFFSYRRSVHRS
EPDYGRQIHAIVLEPSAQDAAALRPQK

Sequences:

>Translated_267_residues
MTIASQRLAAVPGLRHAFFSRAGGVSQGIYAGLNGGIGSNDDPAHVAENRRRMAQTMGVPPERFLTVYQVHSPDVAVAQA
PWDNAARPKADAMVTATPGLALGVTAADCGPVLFADPTARVIGAAHAGWKGALTGVLEATLDSMEGLGAARGRVIAAIGP
LIRQPSYEVGDEFVARFAAADADYVRFFIPAARPGHAMFDLGGFIRMRLENAGVAAIDDTGIDTYPDENFFSYRRSVHRS
EPDYGRQIHAIVLEPSAQDAAALRPQK
>Mature_266_residues
TIASQRLAAVPGLRHAFFSRAGGVSQGIYAGLNGGIGSNDDPAHVAENRRRMAQTMGVPPERFLTVYQVHSPDVAVAQAP
WDNAARPKADAMVTATPGLALGVTAADCGPVLFADPTARVIGAAHAGWKGALTGVLEATLDSMEGLGAARGRVIAAIGPL
IRQPSYEVGDEFVARFAAADADYVRFFIPAARPGHAMFDLGGFIRMRLENAGVAAIDDTGIDTYPDENFFSYRRSVHRSE
PDYGRQIHAIVLEPSAQDAAALRPQK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=233, Percent_Identity=29.1845493562232, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI190194372, Length=233, Percent_Identity=29.1845493562232, Blast_Score=82, Evalue=4e-16,
Organism=Escherichia coli, GI1788945, Length=218, Percent_Identity=38.0733944954128, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28265; Mature: 28134

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIASQRLAAVPGLRHAFFSRAGGVSQGIYAGLNGGIGSNDDPAHVAENRRRMAQTMGVP
CCCCHHHHHHCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PERFLTVYQVHSPDVAVAQAPWDNAARPKADAMVTATPGLALGVTAADCGPVLFADPTAR
HHHEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEECCHHH
VIGAAHAGWKGALTGVLEATLDSMEGLGAARGRVIAAIGPLIRQPSYEVGDEFVARFAAA
HHHCCCCCCHHHHHHHHHHHHHHHHCCCHHCCEEHHHHHHHHHCCCHHHHHHHHHHHHHC
DADYVRFFIPAARPGHAMFDLGGFIRMRLENAGVAAIDDTGIDTYPDENFFSYRRSVHRS
CCCEEEEEECCCCCCCCHHHCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCC
EPDYGRQIHAIVLEPSAQDAAALRPQK
CCCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TIASQRLAAVPGLRHAFFSRAGGVSQGIYAGLNGGIGSNDDPAHVAENRRRMAQTMGVP
CCCHHHHHHCCCHHHHHHHHCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PERFLTVYQVHSPDVAVAQAPWDNAARPKADAMVTATPGLALGVTAADCGPVLFADPTAR
HHHEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEECCHHH
VIGAAHAGWKGALTGVLEATLDSMEGLGAARGRVIAAIGPLIRQPSYEVGDEFVARFAAA
HHHCCCCCCHHHHHHHHHHHHHHHHCCCHHCCEEHHHHHHHHHCCCHHHHHHHHHHHHHC
DADYVRFFIPAARPGHAMFDLGGFIRMRLENAGVAAIDDTGIDTYPDENFFSYRRSVHRS
CCCEEEEEECCCCCCCCHHHCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHCC
EPDYGRQIHAIVLEPSAQDAAALRPQK
CCCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]