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The map label for this gene is flgD [H]

Identifier: 86751225

GI number: 86751225

Start: 4690182

End: 4690883

Strand: Direct

Name: flgD [H]

Synonym: RPB_4118

Alternate gene names: 86751225

Gene position: 4690182-4690883 (Clockwise)

Preceding gene: 86751224

Following gene: 86751227

Centisome position: 87.97

GC content: 64.96

Gene sequence:

>702_bases
ATGTCAGCCGCAGCCACCACCGCGACGACGCCGTATTCGGCTCCCAACGCCAACTACACCGCGACCGCGACGTCGAGCTC
GACCACCGGCATCGCCGACAATTTCCAGACCTTCCTGACGCTGCTGACGACACAATTGCAGAACCAGAATCCGCTGGAGC
CGCTGGACACCAACCAGTTCACCCAGCAGCTGGTGCAGTTCGCCGGCGTCGAGCAGCAGCTCAAGACCAATGAAACGCTG
TCCTCGCTCCTGAAGATGCAGTCCACCGCACAGACCACGCAGGCGATGAACTTCATCGGCGCCACCGCCGTGGTCGACGG
CAGCAAATCGCACTACGACGGCAAGACCGCGGGTTGGACGCTGTCCACCGACAAGCCGGTGACGGCGCAGGTGTCGGTCC
AGAGCTCGACCGGGCAGACGGTGTATTCCGGCAAATTCACGCTCAACGCCGGCGCCAACCAGGGCTTCACCTGGGACGGC
CGCGGCAATGACGGGACGCAGTGGCCGGAGGGCGACTACACGCTGTCGGTGGTCGCGACCGACGCCGCCGGCCAGCCGGC
GGCCGTCTCCACCCAGATCCAGGGCACCATCGATTCCGTCGACCTGACCCAATCGCCACCGATGTTGACGATCGGCCTGC
AGACCTTCACCCTCGACCAGATCAAGCGCGTGGTGAAACCGAGCACCGGCACGACGACGTGA

Upstream 100 bases:

>100_bases
CGAGGAAGAGCTGCCGACCGCGGTCGCCGCCGGTCGCAGCTACGGCCGGATGCTCGGTGCGAGCAGCGGCGTCGATATCC
GGATCTGAGGAGTCATCACC

Downstream 100 bases:

>100_bases
CGCCCGCTGCGCGCGGCTCGATGCGACGCGGTGTCTTCGGGCGAGATCGCGTTACTGCCCGATCAGCTGATCGGCGAAAT
ACGCGATGGTCTTGCGATAC

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSAAATTATTPYSAPNANYTATATSSSTTGIADNFQTFLTLLTTQLQNQNPLEPLDTNQFTQQLVQFAGVEQQLKTNETL
SSLLKMQSTAQTTQAMNFIGATAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSVQSSTGQTVYSGKFTLNAGANQGFTWDG
RGNDGTQWPEGDYTLSVVATDAAGQPAAVSTQIQGTIDSVDLTQSPPMLTIGLQTFTLDQIKRVVKPSTGTTT

Sequences:

>Translated_233_residues
MSAAATTATTPYSAPNANYTATATSSSTTGIADNFQTFLTLLTTQLQNQNPLEPLDTNQFTQQLVQFAGVEQQLKTNETL
SSLLKMQSTAQTTQAMNFIGATAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSVQSSTGQTVYSGKFTLNAGANQGFTWDG
RGNDGTQWPEGDYTLSVVATDAAGQPAAVSTQIQGTIDSVDLTQSPPMLTIGLQTFTLDQIKRVVKPSTGTTT
>Mature_232_residues
SAAATTATTPYSAPNANYTATATSSSTTGIADNFQTFLTLLTTQLQNQNPLEPLDTNQFTQQLVQFAGVEQQLKTNETLS
SLLKMQSTAQTTQAMNFIGATAVVDGSKSHYDGKTAGWTLSTDKPVTAQVSVQSSTGQTVYSGKFTLNAGANQGFTWDGR
GNDGTQWPEGDYTLSVVATDAAGQPAAVSTQIQGTIDSVDLTQSPPMLTIGLQTFTLDQIKRVVKPSTGTTT

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=211, Percent_Identity=33.6492890995261, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24522; Mature: 24391

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAATTATTPYSAPNANYTATATSSSTTGIADNFQTFLTLLTTQLQNQNPLEPLDTNQF
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIGATAVVDGSKSHYDGKTAGWT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEE
LSTDKPVTAQVSVQSSTGQTVYSGKFTLNAGANQGFTWDGRGNDGTQWPEGDYTLSVVAT
ECCCCCEEEEEEEECCCCCEEEECEEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEEEE
DAAGQPAAVSTQIQGTIDSVDLTQSPPMLTIGLQTFTLDQIKRVVKPSTGTTT
CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECEEHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SAAATTATTPYSAPNANYTATATSSSTTGIADNFQTFLTLLTTQLQNQNPLEPLDTNQF
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TQQLVQFAGVEQQLKTNETLSSLLKMQSTAQTTQAMNFIGATAVVDGSKSHYDGKTAGWT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEE
LSTDKPVTAQVSVQSSTGQTVYSGKFTLNAGANQGFTWDGRGNDGTQWPEGDYTLSVVAT
ECCCCCEEEEEEEECCCCCEEEECEEEEECCCCCCEEECCCCCCCCCCCCCCEEEEEEEE
DAAGQPAAVSTQIQGTIDSVDLTQSPPMLTIGLQTFTLDQIKRVVKPSTGTTT
CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECEEHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]