Click here to switch to the map view.

The map label for this gene is frc [H]

Identifier: 86751055

GI number: 86751055

Start: 4506580

End: 4507785

Strand: Direct

Name: frc [H]

Synonym: RPB_3947

Alternate gene names: 86751055

Gene position: 4506580-4507785 (Clockwise)

Preceding gene: 86751054

Following gene: 86751058

Centisome position: 84.52

GC content: 67.66

Gene sequence:

>1206_bases
ATGGACGACGGCATCTTCAAGGGTCTCAAGGTGCTCGATTGCGCGAGCTTCATCGCCGCACCCGCCGCCGCCACGGTGCT
GTCGGATTTCGGCGCCGACGTCATCAAGATCGAGCCGCCGGGCGCCGGCGATCCCTATCGCAACCTGCCGAACCTGCCGG
GCTATCCGCGCAGCGAGCACAACTACGCGTGGATGATCGAGAGCCGCAACAAGCGCAGCCTCGCGCTCGACCTCGCCAAA
CCGGAAGGCAAAGAGGTGTTGCGCAAGCTCGTCGCCGAGGCCGACGTGTTCATCACCAATTTCCCGCCGCAGGTGCGGGC
GCGGCTCGGCATCGCCTATGCGGATCTGGCGCCGCTCAACGCGCGGCTGATCTATGCGAGCTTCACCGGCTATGGCGAGC
GCGGCGAGGAGGCCAACAAGCCGGGCTTCGACAGCAACGCGTGGTGGGCGCGCTCCGGCATGATGGATCTGGTCCGCGCC
GATGAAGACACCACGCCGGCGCGCTCGGTCGCCGGGATGGGCGACCATCCCTGCGCGATGGCGCTGTACGGCGCGATCGT
CACCGCACTGTACAAGCGCGAACGCAGCGGCAAGGGCAGCGAGGTGAAGTCCAATCTGATGGCCAATGGCGTGTGGTCGT
CGAGCGTGCTGGCGCAGGCCAAGCTGGTCGGCGCGCAGTTCCAGCCGCGGATGCCGCGCGAGCGCGCGCTCAACGCGGTG
GCCAATCATTATCGCTGCCGCGACGGCCGCTGGCTGATCCTGTCGCTGCTCAACGAAGAGAAGCAGTGGCCGACGCTGAC
GCGCTGCCTCGGCCGCGAGGACCTGACCGACGATCCGCGCTTCGCCACCACGCCCGACCGCCATGCCCGCTCGGTCGAAC
TGATCGCGATCTTCGACGAGATCTTCGCGACCCGCGACCTCGCCGACTGGCGCAAGGCGCTCGACGGCAGCGGGCTGGTG
TTCGGCGTCGTCGGCATCCTCGACGACATCCCGAACGATCAGCAGATGATCGACAACGACGTGCTGGTGCCGTTCGAGAA
CAACACCATCATGACGATCAACAGCCCGATCTGGGTCGAGGGCAGCGCCAAGACGCGGCCGCGGCTGCCGCCGGCGCTCG
GCGAACACAGCGACGACGTGCTGCGCAGCGCCGGCTACGACGACGCCGCGATCAGCGCGCTGCGGACATCCGGCGTGGTG
GGATAA

Upstream 100 bases:

>100_bases
CGATAGCCCAACCCGGTTCATATGCGCGCCACCGCCGAAAACCTGCGCCAGCGCATATTCCGGCCGACGAAAAACAACAA
ACGCCAGGGAGCAGCGCGCG

Downstream 100 bases:

>100_bases
TCAGCGTCGGAAGAAGATCCAGCCGAAGGCGGCGAGCGCGATCAGCACGGTGGCGGCGATCGCGAAACCGGAGACGCGGA
CCTCGCTCGCGGTCTTCCGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MDDGIFKGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEHNYAWMIESRNKRSLALDLAK
PEGKEVLRKLVAEADVFITNFPPQVRARLGIAYADLAPLNARLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRA
DEDTTPARSVAGMGDHPCAMALYGAIVTALYKRERSGKGSEVKSNLMANGVWSSSVLAQAKLVGAQFQPRMPRERALNAV
ANHYRCRDGRWLILSLLNEEKQWPTLTRCLGREDLTDDPRFATTPDRHARSVELIAIFDEIFATRDLADWRKALDGSGLV
FGVVGILDDIPNDQQMIDNDVLVPFENNTIMTINSPIWVEGSAKTRPRLPPALGEHSDDVLRSAGYDDAAISALRTSGVV
G

Sequences:

>Translated_401_residues
MDDGIFKGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEHNYAWMIESRNKRSLALDLAK
PEGKEVLRKLVAEADVFITNFPPQVRARLGIAYADLAPLNARLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRA
DEDTTPARSVAGMGDHPCAMALYGAIVTALYKRERSGKGSEVKSNLMANGVWSSSVLAQAKLVGAQFQPRMPRERALNAV
ANHYRCRDGRWLILSLLNEEKQWPTLTRCLGREDLTDDPRFATTPDRHARSVELIAIFDEIFATRDLADWRKALDGSGLV
FGVVGILDDIPNDQQMIDNDVLVPFENNTIMTINSPIWVEGSAKTRPRLPPALGEHSDDVLRSAGYDDAAISALRTSGVV
G
>Mature_401_residues
MDDGIFKGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEHNYAWMIESRNKRSLALDLAK
PEGKEVLRKLVAEADVFITNFPPQVRARLGIAYADLAPLNARLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRA
DEDTTPARSVAGMGDHPCAMALYGAIVTALYKRERSGKGSEVKSNLMANGVWSSSVLAQAKLVGAQFQPRMPRERALNAV
ANHYRCRDGRWLILSLLNEEKQWPTLTRCLGREDLTDDPRFATTPDRHARSVELIAIFDEIFATRDLADWRKALDGSGLV
FGVVGILDDIPNDQQMIDNDVLVPFENNTIMTINSPIWVEGSAKTRPRLPPALGEHSDDVLRSAGYDDAAISALRTSGVV
G

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=399, Percent_Identity=30.0751879699248, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI300863124, Length=425, Percent_Identity=29.4117647058824, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI300863126, Length=399, Percent_Identity=27.3182957393484, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI13376042, Length=425, Percent_Identity=27.0588235294118, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=25, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=25, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI266458397, Length=273, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458393, Length=273, Percent_Identity=29.3040293040293, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=141, Percent_Identity=32.6241134751773, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=33.1081081081081, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=28.169014084507, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=26.4397905759162, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786222, Length=408, Percent_Identity=23.5294117647059, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=27.25, Blast_Score=165, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24585488, Length=321, Percent_Identity=27.7258566978193, Blast_Score=105, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 43930; Mature: 43930

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDGIFKGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCCCCCC
NYAWMIESRNKRSLALDLAKPEGKEVLRKLVAEADVFITNFPPQVRARLGIAYADLAPLN
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCHHHCCCCCC
ARLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDTTPARSVAGMGDHPCAM
EEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCHHHHCCCCCCHHHH
ALYGAIVTALYKRERSGKGSEVKSNLMANGVWSSSVLAQAKLVGAQFQPRMPRERALNAV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ANHYRCRDGRWLILSLLNEEKQWPTLTRCLGREDLTDDPRFATTPDRHARSVELIAIFDE
HHHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCEEHHHHHHH
IFATRDLADWRKALDGSGLVFGVVGILDDIPNDQQMIDNDVLVPFENNTIMTINSPIWVE
HHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCEEEEECCCEEEEECCCEEEE
GSAKTRPRLPPALGEHSDDVLRSAGYDDAAISALRTSGVVG
CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MDDGIFKGLKVLDCASFIAAPAAATVLSDFGADVIKIEPPGAGDPYRNLPNLPGYPRSEH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHCCCCCCCCCCCCC
NYAWMIESRNKRSLALDLAKPEGKEVLRKLVAEADVFITNFPPQVRARLGIAYADLAPLN
CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCHHHCCCCCC
ARLIYASFTGYGERGEEANKPGFDSNAWWARSGMMDLVRADEDTTPARSVAGMGDHPCAM
EEEEEEEECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCHHHHCCCCCCHHHH
ALYGAIVTALYKRERSGKGSEVKSNLMANGVWSSSVLAQAKLVGAQFQPRMPRERALNAV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ANHYRCRDGRWLILSLLNEEKQWPTLTRCLGREDLTDDPRFATTPDRHARSVELIAIFDE
HHHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCEEHHHHHHH
IFATRDLADWRKALDGSGLVFGVVGILDDIPNDQQMIDNDVLVPFENNTIMTINSPIWVE
HHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHCCCEEEEECCCEEEEECCCEEEE
GSAKTRPRLPPALGEHSDDVLRSAGYDDAAISALRTSGVVG
CCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA