Click here to switch to the map view.

The map label for this gene is ycjF [C]

Identifier: 86751050

GI number: 86751050

Start: 4498749

End: 4499852

Strand: Direct

Name: ycjF [C]

Synonym: RPB_3942

Alternate gene names: 86751050

Gene position: 4498749-4499852 (Clockwise)

Preceding gene: 86751049

Following gene: 86751051

Centisome position: 84.38

GC content: 69.38

Gene sequence:

>1104_bases
ATGACCGAGCGGGTGCCTCCCCGAAGGCCGGCGACCTTCAAGCTCACCGATCCGAGCGTTGTGCTGATCGATTCCGACGA
GAGCGGCAGCAGCCGCCCCGCCGCGCAGGCGAGCGCGACGGCGTCGTCGACGGCGTCAGCGGCGTCGTCGGCCTCGGCGC
CGCCGCCGCGCGCGCGGATCCAGCTCGCCAAGGAAGCCGAGCCGCCGATCGTCGCGCCGAAACCGCCGGCCAGCGTCATC
AATCCGAAGAAGGGTTTCCGCTGGGGCACGCTGTTCTGGTCAGCCGCGGGCGGGCTGGTGACGCTGGCGTTCTGGCTGTG
GGTCAGCAAGCTGATCGAGGATCTGTTCGCGCAGAGCCAGACGCTCGGCACCGTCGGCATGGTGCTGGCGCTGCTCGCCG
CCGGCTCGCTCGCGATCATCGTCGGCCGCGAGGCATTCGGGTTGATCCGGCTGGCGCGGATCGAGCAGTTGCACGCCCGG
GCCGCGAAGGTGCTCGAAACCGACAACCGCGCCGAGGCGCAGGCGATCATCCGCGAATTGCTGAAATTCGAGCACCCCAA
TCCGCAACTCGCGCGCGGCCGTGCGACGCTGGAAAAGCACATCGACGACATCATCGACGGCGCCGATCTGATCAGGCTCG
CCGAGCGCGAATTGATGACGCCGCTCGACCTCGAAGCGCGGGTGATGATCTCGAAGGCGGCGCAGCGCGTCTCGCTGGTG
ACTGCGATCAGCCCGAAGGCGCTGATCGACGTGCTGTTCGTGGCGATCGTCGCCACCCGGCTGATCGGCCAGCTCGCGCG
GCTGTACGGCGGCCGCCCCGGCGCGCTCGGCATGTTCAAGCTGATGCGGCAGACGATATCGCACCTCGCCGTCACCGGCG
GCATCGCGCTCAGCGACAGCGTGATGCAATCCGTGCTCGGCCACGGCCTCGCCTCGCGGCTGTCGGCCAAGCTCGGCGAA
GGCGTCGTCAACGGCATGCTGACCGCCCGCCTCGGCCTCGCCGCGATCGACCTGACGCGGCCGCTCCCGTTCGACGCCCT
GTCCCGCCCGGTGCTCGGCGATCTGGTCAAGGATCTGCTGAAGAAGCGCGAGAAGGACGAGTAG

Upstream 100 bases:

>100_bases
TCCGGCCGCCACGGCTCGACAATCGCGATCCGGACGGCCCGGCACTGCCTCACATCCGCCTCGACCGCGCGCTCCAGTTC
CTGATCGGAGATCAACTGCA

Downstream 100 bases:

>100_bases
CGTCGCGCTCCCTCTCCCGCCTGCGGGAGAGGGCTGGGGTGAGGGCGACGCGAGTCGCTGACTCTCGACCCTGCGGAAAC
GCCCCCTCACCCGGATTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTERVPPRRPATFKLTDPSVVLIDSDESGSSRPAAQASATASSTASAASSASAPPPRARIQLAKEAEPPIVAPKPPASVI
NPKKGFRWGTLFWSAAGGLVTLAFWLWVSKLIEDLFAQSQTLGTVGMVLALLAAGSLAIIVGREAFGLIRLARIEQLHAR
AAKVLETDNRAEAQAIIRELLKFEHPNPQLARGRATLEKHIDDIIDGADLIRLAERELMTPLDLEARVMISKAAQRVSLV
TAISPKALIDVLFVAIVATRLIGQLARLYGGRPGALGMFKLMRQTISHLAVTGGIALSDSVMQSVLGHGLASRLSAKLGE
GVVNGMLTARLGLAAIDLTRPLPFDALSRPVLGDLVKDLLKKREKDE

Sequences:

>Translated_367_residues
MTERVPPRRPATFKLTDPSVVLIDSDESGSSRPAAQASATASSTASAASSASAPPPRARIQLAKEAEPPIVAPKPPASVI
NPKKGFRWGTLFWSAAGGLVTLAFWLWVSKLIEDLFAQSQTLGTVGMVLALLAAGSLAIIVGREAFGLIRLARIEQLHAR
AAKVLETDNRAEAQAIIRELLKFEHPNPQLARGRATLEKHIDDIIDGADLIRLAERELMTPLDLEARVMISKAAQRVSLV
TAISPKALIDVLFVAIVATRLIGQLARLYGGRPGALGMFKLMRQTISHLAVTGGIALSDSVMQSVLGHGLASRLSAKLGE
GVVNGMLTARLGLAAIDLTRPLPFDALSRPVLGDLVKDLLKKREKDE
>Mature_366_residues
TERVPPRRPATFKLTDPSVVLIDSDESGSSRPAAQASATASSTASAASSASAPPPRARIQLAKEAEPPIVAPKPPASVIN
PKKGFRWGTLFWSAAGGLVTLAFWLWVSKLIEDLFAQSQTLGTVGMVLALLAAGSLAIIVGREAFGLIRLARIEQLHARA
AKVLETDNRAEAQAIIRELLKFEHPNPQLARGRATLEKHIDDIIDGADLIRLAERELMTPLDLEARVMISKAAQRVSLVT
AISPKALIDVLFVAIVATRLIGQLARLYGGRPGALGMFKLMRQTISHLAVTGGIALSDSVMQSVLGHGLASRLSAKLGEG
VVNGMLTARLGLAAIDLTRPLPFDALSRPVLGDLVKDLLKKREKDE

Specific function: Unknown

COG id: COG3768

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0283 family [H]

Homologues:

Organism=Escherichia coli, GI1787582, Length=210, Percent_Identity=30.952380952381, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021147
- InterPro:   IPR006507 [H]

Pfam domain/function: PF05128 DUF697 [H]

EC number: NA

Molecular weight: Translated: 39143; Mature: 39012

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERVPPRRPATFKLTDPSVVLIDSDESGSSRPAAQASATASSTASAASSASAPPPRARI
CCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
QLAKEAEPPIVAPKPPASVINPKKGFRWGTLFWSAAGGLVTLAFWLWVSKLIEDLFAQSQ
HHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTVGMVLALLAAGSLAIIVGREAFGLIRLARIEQLHARAAKVLETDNRAEAQAIIREL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LKFEHPNPQLARGRATLEKHIDDIIDGADLIRLAERELMTPLDLEARVMISKAAQRVSLV
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TAISPKALIDVLFVAIVATRLIGQLARLYGGRPGALGMFKLMRQTISHLAVTGGIALSDS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
VMQSVLGHGLASRLSAKLGEGVVNGMLTARLGLAAIDLTRPLPFDALSRPVLGDLVKDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHH
KKREKDE
HHHCCCC
>Mature Secondary Structure 
TERVPPRRPATFKLTDPSVVLIDSDESGSSRPAAQASATASSTASAASSASAPPPRARI
CCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
QLAKEAEPPIVAPKPPASVINPKKGFRWGTLFWSAAGGLVTLAFWLWVSKLIEDLFAQSQ
HHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTVGMVLALLAAGSLAIIVGREAFGLIRLARIEQLHARAAKVLETDNRAEAQAIIREL
HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LKFEHPNPQLARGRATLEKHIDDIIDGADLIRLAERELMTPLDLEARVMISKAAQRVSLV
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TAISPKALIDVLFVAIVATRLIGQLARLYGGRPGALGMFKLMRQTISHLAVTGGIALSDS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
VMQSVLGHGLASRLSAKLGEGVVNGMLTARLGLAAIDLTRPLPFDALSRPVLGDLVKDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHH
KKREKDE
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA