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The map label for this gene is ybiS [H]

Identifier: 86751039

GI number: 86751039

Start: 4485297

End: 4485878

Strand: Direct

Name: ybiS [H]

Synonym: RPB_3931

Alternate gene names: 86751039

Gene position: 4485297-4485878 (Clockwise)

Preceding gene: 86751036

Following gene: 86751040

Centisome position: 84.13

GC content: 68.38

Gene sequence:

>582_bases
ATGGTTCGCTCTGTTGCCCGCGTGTTCGTGTTCGCCGCCGCCATCGCCGTCGCGGGGATTTTGCCGGCATCGGCGCAGGA
AGACCTGCGCGAGGTGATGGGCTTCGGGCCGTTTTTCCGGTCCGGCTCCTCCGGCGTGAGCCCGGTGCCGCGCGAATGGG
TGCAGTTCATGGGCAACTACGCGCCCGGAACCATCGTCATCAGCACCTCCGAGCGGCGGCTGTATCTGGTCGGCGCCGAC
GGAACCGCGCTGCGCTACGGCATCGGCGTCGGCCGCGACGGCTTCCGCTGGTCGGGCACCCACCGCATCACCGCGAAAAA
GGAATGGCCGAGCTGGACCCCGCCGGCGCAGATGTTGCGCCGCCGCCCCGACCTGCCGCGCCATATGGCCGGCGGCGAGG
ACAATCCGCTCGGCGCGCGGGCGATGTATCTCGGCTCGACGCTGTACCGTATCCACGGCTCCAACGAGCCGGAGACGATC
GGCCAGGCGGTTTCGTCCGGCTGCTTCCGGATGACCAATGAGGACGTCAAGGATCTCTACGAGCGCGTCCGCGTCGGCAC
CACGGTCGTGGTCAAGAACTGA

Upstream 100 bases:

>100_bases
AATTGCGCGAGGCGACAATGCGCGCCGTCCCGACGACTTGCGCCGAAGCTGCGATTGTGGCCTGTCTGGGGTCACATTCC
GACGATTGCGAGGTTCACCG

Downstream 100 bases:

>100_bases
CACGATCGCGTGCGTCGGGCCCGCATCGGGCCCGATGCCCCGAATTGCGGGTTGTGCGGCCGCCGGGATTGCGGCAGCGT
CCGGCGATGCAACGCGGCCC

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVRSVARVFVFAAAIAVAGILPASAQEDLREVMGFGPFFRSGSSGVSPVPREWVQFMGNYAPGTIVISTSERRLYLVGAD
GTALRYGIGVGRDGFRWSGTHRITAKKEWPSWTPPAQMLRRRPDLPRHMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNEDVKDLYERVRVGTTVVVKN

Sequences:

>Translated_193_residues
MVRSVARVFVFAAAIAVAGILPASAQEDLREVMGFGPFFRSGSSGVSPVPREWVQFMGNYAPGTIVISTSERRLYLVGAD
GTALRYGIGVGRDGFRWSGTHRITAKKEWPSWTPPAQMLRRRPDLPRHMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNEDVKDLYERVRVGTTVVVKN
>Mature_193_residues
MVRSVARVFVFAAAIAVAGILPASAQEDLREVMGFGPFFRSGSSGVSPVPREWVQFMGNYAPGTIVISTSERRLYLVGAD
GTALRYGIGVGRDGFRWSGTHRITAKKEWPSWTPPAQMLRRRPDLPRHMAGGEDNPLGARAMYLGSTLYRIHGSNEPETI
GQAVSSGCFRMTNEDVKDLYERVRVGTTVVVKN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=134, Percent_Identity=41.7910447761194, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788299, Length=136, Percent_Identity=38.9705882352941, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787968, Length=171, Percent_Identity=33.9181286549708, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787356, Length=139, Percent_Identity=34.5323741007194, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 21162; Mature: 21162

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRSVARVFVFAAAIAVAGILPASAQEDLREVMGFGPFFRSGSSGVSPVPREWVQFMGNY
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHCCC
APGTIVISTSERRLYLVGADGTALRYGIGVGRDGFRWSGTHRITAKKEWPSWTPPAQMLR
CCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCEECCCEEEEECCCCCCCCCHHHHHH
RRPDLPRHMAGGEDNPLGARAMYLGSTLYRIHGSNEPETIGQAVSSGCFRMTNEDVKDLY
CCCCCCHHHCCCCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH
ERVRVGTTVVVKN
HHHHCCCEEEEEC
>Mature Secondary Structure
MVRSVARVFVFAAAIAVAGILPASAQEDLREVMGFGPFFRSGSSGVSPVPREWVQFMGNY
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCCHHHHHHHCCC
APGTIVISTSERRLYLVGADGTALRYGIGVGRDGFRWSGTHRITAKKEWPSWTPPAQMLR
CCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCEECCCEEEEECCCCCCCCCHHHHHH
RRPDLPRHMAGGEDNPLGARAMYLGSTLYRIHGSNEPETIGQAVSSGCFRMTNEDVKDLY
CCCCCCHHHCCCCCCCCCHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHH
ERVRVGTTVVVKN
HHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]