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The map label for this gene is cph2 [H]

Identifier: 86750982

GI number: 86750982

Start: 4429091

End: 4430302

Strand: Direct

Name: cph2 [H]

Synonym: RPB_3874

Alternate gene names: 86750982

Gene position: 4429091-4430302 (Clockwise)

Preceding gene: 86750980

Following gene: 86750985

Centisome position: 83.07

GC content: 66.67

Gene sequence:

>1212_bases
ATGTTGAGCGTCCCGACACTCTGGGTGGTCTTTCTGATCAACTTCCTCGCGCTGGGTCTGGTCTGGACCCACGTGATGCG
GAGCTATCCGAACTTCACACCGGCGCGCTACTGGACCGCGGCCTGCTTTGTGGTTTCACTCGGCGCGGGCTTCGGGATGC
TGCGGGGCGTGATGGACACCAAGGTGCCCCTCATCGTCGGCGGCAGCACCGTCGTTCTGGCCGCCTATCTGATCGCAATG
GGCGTCTTCTGCTTTTACGGCCGGCACATGAGCTGGCGGCTCGCCCTCGGCGCGACCGCAGCCTGCAGCGCGGGTCTCGG
CTTCTTCCTGCTCGTGATCGATTCGATGATGATGCGGATCCTGATCTATTCGGTGGCCCAGGCGGTCCCGATCGCGATGA
CGTTGCCACTGATGCTGTCGCGCAGCGGCCGCCGCAATCCCGGCGCGCGGATGGCCGCAGCGGTGGCGATCGCGATGCTG
CTGGTCTACGCGGTCCGCTCCGGGGCTGCGATCATCGGCGTCGGCGGCGAATTGTCGGTGGTCAATTTCAATGACTTTCA
GGCTTCGCTGGTGCTGATGCTGGTGTTCCTGTCGATGACGCTGAACTTCTCGTTCCTGCTGATGGCGATCGACCGGCTGC
GCTCCGAAGTCGAGAGCCTCGCGCTGATCGACGACCTCACCGGCATCGCCAACCGCCGCCATTTGCTGCAGCGGATGGTG
GCGCAGTGTCGGACCGCGATGCAGACCGGCGAGCCGTTCACGGTGCTGGCGATCGACCTCGACGGCTTCAAGGCGATCAA
TGACGGCCACGGTCACGCCGCCGGCGACGAGTGCCTGCGCCGGTTCTCCGGCGCCGCGCAGGCGCGGCTGCGTCCCGGCG
ACCTGTTTGCGCGCACCGGTGGCGACGAGTTCTGCGTGGTGATGCCGGCGACCACCCTGCGCGAAGGCGCGATGGTCGCC
CGCCACATCCTCGAAGAAAGCCGCGCGCTCTCGACCCAAGGCGGCGATGCGGCCAGCGCCATCGCCATCGCCGCTTCGAT
CGGCGTCGCGCAGTGGACGCCGCAGGTCGGATTGCATCCCGACCGGCTGATCGCGGCCGCGGACGCCGCGCTGTACAACG
CCAAGAAACTCGGCAAGGATCGCTACGCGATCCACGAGCCGAAGCTGGAACCGCTGCCTCCGTTCCTCGAGCCGGTGCGC
AAGATCGCCTGA

Upstream 100 bases:

>100_bases
TTAAGCGCTGAAGCTGCAACCTGCCGTCAACTTCGGGAGTTGCAATGAACCGGCAGAAAATCCAGAGCAGGATATCGGCG
ACGCATCGCGCAGGCGTGCG

Downstream 100 bases:

>100_bases
TCGTTTCGCGGCCGTTCGCAAGGCGTCCATCGATGATCCATCGCCTGATCGGAACGACGCTGCTGGCCGCGGCGGTGTTG
CCGTTGCACCAGGCCTCGGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MLSVPTLWVVFLINFLALGLVWTHVMRSYPNFTPARYWTAACFVVSLGAGFGMLRGVMDTKVPLIVGGSTVVLAAYLIAM
GVFCFYGRHMSWRLALGATAACSAGLGFFLLVIDSMMMRILIYSVAQAVPIAMTLPLMLSRSGRRNPGARMAAAVAIAML
LVYAVRSGAAIIGVGGELSVVNFNDFQASLVLMLVFLSMTLNFSFLLMAIDRLRSEVESLALIDDLTGIANRRHLLQRMV
AQCRTAMQTGEPFTVLAIDLDGFKAINDGHGHAAGDECLRRFSGAAQARLRPGDLFARTGGDEFCVVMPATTLREGAMVA
RHILEESRALSTQGGDAASAIAIAASIGVAQWTPQVGLHPDRLIAAADAALYNAKKLGKDRYAIHEPKLEPLPPFLEPVR
KIA

Sequences:

>Translated_403_residues
MLSVPTLWVVFLINFLALGLVWTHVMRSYPNFTPARYWTAACFVVSLGAGFGMLRGVMDTKVPLIVGGSTVVLAAYLIAM
GVFCFYGRHMSWRLALGATAACSAGLGFFLLVIDSMMMRILIYSVAQAVPIAMTLPLMLSRSGRRNPGARMAAAVAIAML
LVYAVRSGAAIIGVGGELSVVNFNDFQASLVLMLVFLSMTLNFSFLLMAIDRLRSEVESLALIDDLTGIANRRHLLQRMV
AQCRTAMQTGEPFTVLAIDLDGFKAINDGHGHAAGDECLRRFSGAAQARLRPGDLFARTGGDEFCVVMPATTLREGAMVA
RHILEESRALSTQGGDAASAIAIAASIGVAQWTPQVGLHPDRLIAAADAALYNAKKLGKDRYAIHEPKLEPLPPFLEPVR
KIA
>Mature_403_residues
MLSVPTLWVVFLINFLALGLVWTHVMRSYPNFTPARYWTAACFVVSLGAGFGMLRGVMDTKVPLIVGGSTVVLAAYLIAM
GVFCFYGRHMSWRLALGATAACSAGLGFFLLVIDSMMMRILIYSVAQAVPIAMTLPLMLSRSGRRNPGARMAAAVAIAML
LVYAVRSGAAIIGVGGELSVVNFNDFQASLVLMLVFLSMTLNFSFLLMAIDRLRSEVESLALIDDLTGIANRRHLLQRMV
AQCRTAMQTGEPFTVLAIDLDGFKAINDGHGHAAGDECLRRFSGAAQARLRPGDLFARTGGDEFCVVMPATTLREGAMVA
RHILEESRALSTQGGDAASAIAIAASIGVAQWTPQVGLHPDRLIAAADAALYNAKKLGKDRYAIHEPKLEPLPPFLEPVR
KIA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=40.2439024390244, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=36.6279069767442, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=31.3609467455621, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=35.0574712643678, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=32.9411764705882, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=29.6969696969697, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.3370786516854, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=28.2352941176471, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=204, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43361; Mature: 43361

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVPTLWVVFLINFLALGLVWTHVMRSYPNFTPARYWTAACFVVSLGAGFGMLRGVMDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHC
KVPLIVGGSTVVLAAYLIAMGVFCFYGRHMSWRLALGATAACSAGLGFFLLVIDSMMMRI
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LIYSVAQAVPIAMTLPLMLSRSGRRNPGARMAAAVAIAMLLVYAVRSGAAIIGVGGELSV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEE
VNFNDFQASLVLMLVFLSMTLNFSFLLMAIDRLRSEVESLALIDDLTGIANRRHLLQRMV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQCRTAMQTGEPFTVLAIDLDGFKAINDGHGHAAGDECLRRFSGAAQARLRPGDLFARTG
HHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHCCHHHCCCCCCHHHEECC
GDEFCVVMPATTLREGAMVARHILEESRALSTQGGDAASAIAIAASIGVAQWTPQVGLHP
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHCCCCCCCCH
DRLIAAADAALYNAKKLGKDRYAIHEPKLEPLPPFLEPVRKIA
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MLSVPTLWVVFLINFLALGLVWTHVMRSYPNFTPARYWTAACFVVSLGAGFGMLRGVMDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHC
KVPLIVGGSTVVLAAYLIAMGVFCFYGRHMSWRLALGATAACSAGLGFFLLVIDSMMMRI
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LIYSVAQAVPIAMTLPLMLSRSGRRNPGARMAAAVAIAMLLVYAVRSGAAIIGVGGELSV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEE
VNFNDFQASLVLMLVFLSMTLNFSFLLMAIDRLRSEVESLALIDDLTGIANRRHLLQRMV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQCRTAMQTGEPFTVLAIDLDGFKAINDGHGHAAGDECLRRFSGAAQARLRPGDLFARTG
HHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCHHHHHHHHCCHHHCCCCCCHHHEECC
GDEFCVVMPATTLREGAMVARHILEESRALSTQGGDAASAIAIAASIGVAQWTPQVGLHP
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHCCCCCCCCH
DRLIAAADAALYNAKKLGKDRYAIHEPKLEPLPPFLEPVRKIA
HHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]