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The map label for this gene is 86750819

Identifier: 86750819

GI number: 86750819

Start: 4246466

End: 4247656

Strand: Reverse

Name: 86750819

Synonym: RPB_3709

Alternate gene names: NA

Gene position: 4247656-4246466 (Counterclockwise)

Preceding gene: 86750820

Following gene: 86750817

Centisome position: 79.67

GC content: 67.17

Gene sequence:

>1191_bases
GTGACGACGGAGGCATCGAGCGCCGCCAATCTGCTCCGCGTGCGAAGACCGCACGAACACAGCCGCGTCACCTATGTCGA
ATTGTTCTTCGACCTGGTGTTCGTGTTCGCCGTCACCCAGGTGTCGCATTTCCTGCTGGGGCATGTCACGCCGGTGGGCG
CGCTGCAGGCGCTGATCCTGATGTCGGCGATCTGGTGGGTGTGGGTCTACACTTCCTGGATCACCAACTGGCTCGACCCC
GAACTCACCCGCGTCCGGCTGATGCTGTTCGCGCTGATGAGCGCCGGGTTGCTGCTGTCGACCTCGATCCCGCGCGCCTT
CGAGAGCCGCGGCCTCGCTTTCGCGCTGGCCTTCGTGGCGATGCAGGTCGGACGCAGTGCCTTCGCCTTTCTCTCGACGC
CGAAAGCCGAGCCGCTGCGGATCAATTTCTTCCGGATCACGAGTTGGCTGTGCGTCAGCGGCGTGTTCTGGATCGCCGGC
GGCCTGCTCGATGGCCCCGCGCGGATCGCGCTGTGGATGATCGCGCTGGCGATCGAATATGCCGGGCCGGTGGCGGGCTT
CTACGTGCCGTGGATCGGCGCCTCGACGACGCAGGATTGGAGCGTCGAGGGCGGCCATATGGCGGAGCGCTGCGCGCTGT
TCATCATCATCGCGCTCGGCGAATCGATCGTGGTGACGGGCGCGACCTTCGCCGGCATCGAATGGACCGTGACGACCTTC
GCCGCCTTCGGCTCGACGCTGATCGGCGCGATCGCGATGTGGTGGATCTACTTCCACATCGGCGTGCATCTCGGCTCGGA
GAAGATCTCGCAGTCGAGCGATCCCGGCCGGCTGGCGCGGCTCGCCTACACCTACATCCACCTGCCGATCGTCGCCGGAA
TCGTCGTCACCGCGGTCAGTGACGAACAGGTGCTGGCGCATCCCAGCGGCCACGCCGACATCAAGGTGACCCTCACCACG
ATCGGCGGCCCGCTGCTGTTCCTGATCGGCGTGCTCTTGTTCAAGCGCGCGGTGCGCGGCCATCTGCAGCCGTCGCACAT
GGCCGGCATCGCCGCGCTGCTGGCGCTGATCCCGGTGGCGCCGCTGATGGCCCCGCTGGCGCTGTCGATCGCGACCACGG
CGATCCTGTTGGCGGTCGGCATCTGGGAAGCCGTCTCGCTCGGCGCCGCCGCGCGCTCGCCGGTGGAGTGA

Upstream 100 bases:

>100_bases
GTCTATCAGTCGTTGCAGGGGCAAATGGGTGGCGTGCTGCACGCGCTGGCGCTGCAGACCGGCGTTCCGGAAGGCTGACG
GTGCGGCGAGGCGCCGCGCG

Downstream 100 bases:

>100_bases
GGGGCGGGGCGGATTCGGGAGAGCGCGATGTCCGGCGAGACCCGTAGCGGCCGTCAAGCAGCGCCAGTTCGACGCGTTAC
CGACGCTGACTGTTGCATCT

Product: low termperature growth protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTTEASSAANLLRVRRPHEHSRVTYVELFFDLVFVFAVTQVSHFLLGHVTPVGALQALILMSAIWWVWVYTSWITNWLDP
ELTRVRLMLFALMSAGLLLSTSIPRAFESRGLAFALAFVAMQVGRSAFAFLSTPKAEPLRINFFRITSWLCVSGVFWIAG
GLLDGPARIALWMIALAIEYAGPVAGFYVPWIGASTTQDWSVEGGHMAERCALFIIIALGESIVVTGATFAGIEWTVTTF
AAFGSTLIGAIAMWWIYFHIGVHLGSEKISQSSDPGRLARLAYTYIHLPIVAGIVVTAVSDEQVLAHPSGHADIKVTLTT
IGGPLLFLIGVLLFKRAVRGHLQPSHMAGIAALLALIPVAPLMAPLALSIATTAILLAVGIWEAVSLGAAARSPVE

Sequences:

>Translated_396_residues
MTTEASSAANLLRVRRPHEHSRVTYVELFFDLVFVFAVTQVSHFLLGHVTPVGALQALILMSAIWWVWVYTSWITNWLDP
ELTRVRLMLFALMSAGLLLSTSIPRAFESRGLAFALAFVAMQVGRSAFAFLSTPKAEPLRINFFRITSWLCVSGVFWIAG
GLLDGPARIALWMIALAIEYAGPVAGFYVPWIGASTTQDWSVEGGHMAERCALFIIIALGESIVVTGATFAGIEWTVTTF
AAFGSTLIGAIAMWWIYFHIGVHLGSEKISQSSDPGRLARLAYTYIHLPIVAGIVVTAVSDEQVLAHPSGHADIKVTLTT
IGGPLLFLIGVLLFKRAVRGHLQPSHMAGIAALLALIPVAPLMAPLALSIATTAILLAVGIWEAVSLGAAARSPVE
>Mature_395_residues
TTEASSAANLLRVRRPHEHSRVTYVELFFDLVFVFAVTQVSHFLLGHVTPVGALQALILMSAIWWVWVYTSWITNWLDPE
LTRVRLMLFALMSAGLLLSTSIPRAFESRGLAFALAFVAMQVGRSAFAFLSTPKAEPLRINFFRITSWLCVSGVFWIAGG
LLDGPARIALWMIALAIEYAGPVAGFYVPWIGASTTQDWSVEGGHMAERCALFIIIALGESIVVTGATFAGIEWTVTTFA
AFGSTLIGAIAMWWIYFHIGVHLGSEKISQSSDPGRLARLAYTYIHLPIVAGIVVTAVSDEQVLAHPSGHADIKVTLTTI
GGPLLFLIGVLLFKRAVRGHLQPSHMAGIAALLALIPVAPLMAPLALSIATTAILLAVGIWEAVSLGAAARSPVE

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010640 [H]

Pfam domain/function: PF06772 LtrA [H]

EC number: NA

Molecular weight: Translated: 42717; Mature: 42586

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEASSAANLLRVRRPHEHSRVTYVELFFDLVFVFAVTQVSHFLLGHVTPVGALQALIL
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MSAIWWVWVYTSWITNWLDPELTRVRLMLFALMSAGLLLSTSIPRAFESRGLAFALAFVA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCCHHHHHHHHH
MQVGRSAFAFLSTPKAEPLRINFFRITSWLCVSGVFWIAGGLLDGPARIALWMIALAIEY
HHHCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AGPVAGFYVPWIGASTTQDWSVEGGHMAERCALFIIIALGESIVVTGATFAGIEWTVTTF
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCEEEECCEECCCHHHHHHH
AAFGSTLIGAIAMWWIYFHIGVHLGSEKISQSSDPGRLARLAYTYIHLPIVAGIVVTAVS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
DEQVLAHPSGHADIKVTLTTIGGPLLFLIGVLLFKRAVRGHLQPSHMAGIAALLALIPVA
CCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
PLMAPLALSIATTAILLAVGIWEAVSLGAAARSPVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTEASSAANLLRVRRPHEHSRVTYVELFFDLVFVFAVTQVSHFLLGHVTPVGALQALIL
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MSAIWWVWVYTSWITNWLDPELTRVRLMLFALMSAGLLLSTSIPRAFESRGLAFALAFVA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCCHHHHHHHHH
MQVGRSAFAFLSTPKAEPLRINFFRITSWLCVSGVFWIAGGLLDGPARIALWMIALAIEY
HHHCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
AGPVAGFYVPWIGASTTQDWSVEGGHMAERCALFIIIALGESIVVTGATFAGIEWTVTTF
CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCEEEECCEECCCHHHHHHH
AAFGSTLIGAIAMWWIYFHIGVHLGSEKISQSSDPGRLARLAYTYIHLPIVAGIVVTAVS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
DEQVLAHPSGHADIKVTLTTIGGPLLFLIGVLLFKRAVRGHLQPSHMAGIAALLALIPVA
CCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
PLMAPLALSIATTAILLAVGIWEAVSLGAAARSPVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9204561; 11481432 [H]