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The map label for this gene is yddA [H]

Identifier: 86750738

GI number: 86750738

Start: 4164281

End: 4165387

Strand: Reverse

Name: yddA [H]

Synonym: RPB_3628

Alternate gene names: 86750738

Gene position: 4165387-4164281 (Counterclockwise)

Preceding gene: 86750744

Following gene: 86750736

Centisome position: 78.13

GC content: 64.14

Gene sequence:

>1107_bases
ATGGGTCTCTTCTCACATAACGACTCGAACGGCCACAACCTGTCCGGGTTCTGGCAGTTGTCGCACCGGTTCTGGCTCAG
CGGCACGCCCCGCGTGACCGGCCTGATCGCCCTGCTGATCACCGTCGTGCTGGCGCAACTGGCGGTGCAATTCTATCTCA
ATTTGTGGAATCGGCATTTTTTCGATGCGCTGGAGCGGCGCGACGGCGCCGAACTCTGGACTCAAACTTTCGTGTTTCTG
GCCTTGGCCTGCACCAGCATTTGCCTGGCCGCGACCTCGGTGTGGGCGCGGATGACCGGGCAGCGCAATTGGCGTGAGTC
GATGACCCGCTCCATCCTGGCAAAATGGTCGCTTAAGAGCCACGACGAGCCGATGAACTGCCATGATCACGGCGCCGAGA
ATCCCGAATACCGCCTGGCGGAGGACGTCCGCGTCGCCACCGATGCGCCGGTCGACCTGATCCTCGCCTTCCTGTCCTCG
GTGCTGACGGCGCTGACGTTCTTCAGTGTGCTGTGGAGCGTCGGCGGCAGCATCGCCGTCAGTCCGTTCGGCTTTCGTCT
GGAAATCCCCGGCTATCTGGTGCTCGGCGTCATCGGCTACTCGACGCTGATGACCGCGCTGATGCTGTGGTTCGGACGCC
GGATGACCAGCATCAGTGAACAGCGCAATCAGAACGAGGCCGAATTCCGCGCCGCCGCGGAGGTGCTGCGCGGCTGCCAC
CCGGCGACCGAGGCGGTCGAAGCCGGGTGGATGGACAAGCTCGAGCGGCGCCTCCAGGCGGTACTGCGATCGTGGCGCGA
TCTATGCTGGCAACTGGTCGACATGACGCTGGTGTCGCACGGCAACTTTCTGTTCGCGCCGGTGGTGGCGTATTTCCTGT
GCTTTCCGAAATATCTCAGCGGCGCAATGTCGCTCGGCGAGGTGACGCAGAGCGCCGCCGCGTTCGTCACGGTGCAGGGC
GCGGTGAACTGGCTGGTCGACAACTATCAGCGGCTGGCCGACTGGCGATCGTCCGCCAATCGCGTCGCGGCGCTGCTGGC
CGCGATCGACAGAATGCCGGACGATAATTCCGCGTCGGTGGAGGCAGCCGAGCCGTTGCCGCGCTGA

Upstream 100 bases:

>100_bases
TGCGGGTGCAAGGCAGGCGGGCGATTATGCCGTCCGGCTACGACGCAATGGGTAGCCCGACCTGCTTTTCAAGTCACCGG
TTCGGGCCTTATATCGCGCC

Downstream 100 bases:

>100_bases
CCGCGGGCGCTTAAGTTGTCGTCTCGCCGCGGGCCCGGCGAATGACGTCGGCGTACCAGCGGAACGATGATTTCGGAATT
CGTCGCTGCGTCGCGTAGTC

Product: ABC transporter-like

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MGLFSHNDSNGHNLSGFWQLSHRFWLSGTPRVTGLIALLITVVLAQLAVQFYLNLWNRHFFDALERRDGAELWTQTFVFL
ALACTSICLAATSVWARMTGQRNWRESMTRSILAKWSLKSHDEPMNCHDHGAENPEYRLAEDVRVATDAPVDLILAFLSS
VLTALTFFSVLWSVGGSIAVSPFGFRLEIPGYLVLGVIGYSTLMTALMLWFGRRMTSISEQRNQNEAEFRAAAEVLRGCH
PATEAVEAGWMDKLERRLQAVLRSWRDLCWQLVDMTLVSHGNFLFAPVVAYFLCFPKYLSGAMSLGEVTQSAAAFVTVQG
AVNWLVDNYQRLADWRSSANRVAALLAAIDRMPDDNSASVEAAEPLPR

Sequences:

>Translated_368_residues
MGLFSHNDSNGHNLSGFWQLSHRFWLSGTPRVTGLIALLITVVLAQLAVQFYLNLWNRHFFDALERRDGAELWTQTFVFL
ALACTSICLAATSVWARMTGQRNWRESMTRSILAKWSLKSHDEPMNCHDHGAENPEYRLAEDVRVATDAPVDLILAFLSS
VLTALTFFSVLWSVGGSIAVSPFGFRLEIPGYLVLGVIGYSTLMTALMLWFGRRMTSISEQRNQNEAEFRAAAEVLRGCH
PATEAVEAGWMDKLERRLQAVLRSWRDLCWQLVDMTLVSHGNFLFAPVVAYFLCFPKYLSGAMSLGEVTQSAAAFVTVQG
AVNWLVDNYQRLADWRSSANRVAALLAAIDRMPDDNSASVEAAEPLPR
>Mature_367_residues
GLFSHNDSNGHNLSGFWQLSHRFWLSGTPRVTGLIALLITVVLAQLAVQFYLNLWNRHFFDALERRDGAELWTQTFVFLA
LACTSICLAATSVWARMTGQRNWRESMTRSILAKWSLKSHDEPMNCHDHGAENPEYRLAEDVRVATDAPVDLILAFLSSV
LTALTFFSVLWSVGGSIAVSPFGFRLEIPGYLVLGVIGYSTLMTALMLWFGRRMTSISEQRNQNEAEFRAAAEVLRGCHP
ATEAVEAGWMDKLERRLQAVLRSWRDLCWQLVDMTLVSHGNFLFAPVVAYFLCFPKYLSGAMSLGEVTQSAAAFVTVQGA
VNWLVDNYQRLADWRSSANRVAALLAAIDRMPDDNSASVEAAEPLPR

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787772, Length=334, Percent_Identity=23.9520958083832, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786575, Length=321, Percent_Identity=21.8068535825545, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 41187; Mature: 41055

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFSHNDSNGHNLSGFWQLSHRFWLSGTPRVTGLIALLITVVLAQLAVQFYLNLWNRHF
CCCCCCCCCCCCCCHHHHEEHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDALERRDGAELWTQTFVFLALACTSICLAATSVWARMTGQRNWRESMTRSILAKWSLKS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
HDEPMNCHDHGAENPEYRLAEDVRVATDAPVDLILAFLSSVLTALTFFSVLWSVGGSIAV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
SPFGFRLEIPGYLVLGVIGYSTLMTALMLWFGRRMTSISEQRNQNEAEFRAAAEVLRGCH
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PATEAVEAGWMDKLERRLQAVLRSWRDLCWQLVDMTLVSHGNFLFAPVVAYFLCFPKYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GAMSLGEVTQSAAAFVTVQGAVNWLVDNYQRLADWRSSANRVAALLAAIDRMPDDNSASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EAAEPLPR
CCCCCCCC
>Mature Secondary Structure 
GLFSHNDSNGHNLSGFWQLSHRFWLSGTPRVTGLIALLITVVLAQLAVQFYLNLWNRHF
CCCCCCCCCCCCCHHHHEEHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDALERRDGAELWTQTFVFLALACTSICLAATSVWARMTGQRNWRESMTRSILAKWSLKS
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
HDEPMNCHDHGAENPEYRLAEDVRVATDAPVDLILAFLSSVLTALTFFSVLWSVGGSIAV
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
SPFGFRLEIPGYLVLGVIGYSTLMTALMLWFGRRMTSISEQRNQNEAEFRAAAEVLRGCH
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PATEAVEAGWMDKLERRLQAVLRSWRDLCWQLVDMTLVSHGNFLFAPVVAYFLCFPKYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GAMSLGEVTQSAAAFVTVQGAVNWLVDNYQRLADWRSSANRVAALLAAIDRMPDDNSASV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EAAEPLPR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]