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The map label for this gene is thcC [H]

Identifier: 86750724

GI number: 86750724

Start: 4150022

End: 4150345

Strand: Direct

Name: thcC [H]

Synonym: RPB_3614

Alternate gene names: 86750724

Gene position: 4150022-4150345 (Clockwise)

Preceding gene: 86750723

Following gene: 86750725

Centisome position: 77.84

GC content: 66.67

Gene sequence:

>324_bases
ATGCCGAGTATCACCTTCATCCATCCCGACGGCCGCAGCGAGATCGTCGACGCCGCGATCGGCGACAGCGCGATGTTCGC
GGCGCTGAACCACGGCATCGACAGCATCGTCGCCGAATGCGGCGGCAACGCCGTCTGCGCCACTTGCCACGTCTATGTCG
ACGACCTCTGGCTGGCGAAGCTGCCGCCGGTCGATGCCAACGAAGACGATCTGCTCGACGGCACCGCGTCGGACCGGCTT
CCGAACAGCCGGCTGTCCTGCCAGATCAAGATCGCGCCCGAGCTCGACGGGCTCGTGCTGCGCCTGCCCGAACGACAGAC
CTGA

Upstream 100 bases:

>100_bases
GCCGCCATCGACATCGACGGCCCGGTCAAGCGCCGCTTCAACAACACGCTGCGCGGGCTGGAAAGCCTGCCGGTCAAGCT
GACTCCTGCCTGAGAGTACC

Downstream 100 bases:

>100_bases
CGAAGCGACCTCGTGACCGGAACACCGGCGCGCTCAACAACATCGACAAGGGGAGACCAACCATGAACCGCACCAAGAGC
CTTCTGGGCCTCGCACTCTC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MPSITFIHPDGRSEIVDAAIGDSAMFAALNHGIDSIVAECGGNAVCATCHVYVDDLWLAKLPPVDANEDDLLDGTASDRL
PNSRLSCQIKIAPELDGLVLRLPERQT

Sequences:

>Translated_107_residues
MPSITFIHPDGRSEIVDAAIGDSAMFAALNHGIDSIVAECGGNAVCATCHVYVDDLWLAKLPPVDANEDDLLDGTASDRL
PNSRLSCQIKIAPELDGLVLRLPERQT
>Mature_106_residues
PSITFIHPDGRSEIVDAAIGDSAMFAALNHGIDSIVAECGGNAVCATCHVYVDDLWLAKLPPVDANEDDLLDGTASDRLP
NSRLSCQIKIAPELDGLVLRLPERQT

Specific function: Ferredoxin-type protein which transfers electrons from rhodocoxin reductase to cytochrome CYP116 (ThcB), which is involved in the degradation of thiocarbamate herbicides [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI72534754, Length=102, Percent_Identity=39.2156862745098, Blast_Score=73, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17544202, Length=101, Percent_Identity=39.6039603960396, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6325004, Length=102, Percent_Identity=37.2549019607843, Blast_Score=70, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24661503, Length=102, Percent_Identity=39.2156862745098, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001055
- InterPro:   IPR018298
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 11428; Mature: 11297

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSITFIHPDGRSEIVDAAIGDSAMFAALNHGIDSIVAECGGNAVCATCHVYVDDLWLAK
CCCEEEECCCCCCCEEHHHCCCHHHHHHHHCCHHHHHHHCCCCEEEEEEEEEECCEEEEC
LPPVDANEDDLLDGTASDRLPNSRLSCQIKIAPELDGLVLRLPERQT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCC
>Mature Secondary Structure 
PSITFIHPDGRSEIVDAAIGDSAMFAALNHGIDSIVAECGGNAVCATCHVYVDDLWLAK
CCEEEECCCCCCCEEHHHCCCHHHHHHHHCCHHHHHHHCCCCEEEEEEEEEECCEEEEC
LPPVDANEDDLLDGTASDRLPNSRLSCQIKIAPELDGLVLRLPERQT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]