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The map label for this gene is 86750665

Identifier: 86750665

GI number: 86750665

Start: 4068972

End: 4069517

Strand: Reverse

Name: 86750665

Synonym: RPB_3555

Alternate gene names: NA

Gene position: 4069517-4068972 (Counterclockwise)

Preceding gene: 86750669

Following gene: 86750664

Centisome position: 76.33

GC content: 67.77

Gene sequence:

>546_bases
GTGCGCGGACGTGACGACGAATGGACCGACCTGATGCTGTCGGCCAATGCCGGCGATAGCGTCGCGTATCAGCGGCTGCT
GAAGGCCGTGACGCCGGTACTGCGGGCCGGCGCCCGCCGGGGCCTGGCGCGGGCAGGGCAGCCGATCGACCAATCCGAGG
ACATCGTGCAGGAAATTCTGTTGGCGGTGCATCTGAAGCGACACACTTGGGATCCGGAGGCGCCGTTTGCGCCCTGGCTG
TTCGCGATCGCACGCAACAAGCTGATCGACGCGTTGCGCCGCCGCGGCCGGCGGGTGTTCGTCAATATCGACGATTTCGC
CGAGACGATCCCGAGCGAAGCGGCGCCGGAGACGCTGCCGTCCGGCGAGATCGCGCGGCACCTCGAGGCTCTGCCGCAGC
GCCAGCGCGAGGTGCTGCAATCGATCGCGGTCGACAGCGCCTCGATCAAGGACACCGCTAACAGGCTGTCGATGAGCGAG
GGCGCGGTGCGCGTCGCGCTGCATCGTGGTCTGGCTGCGCTCGCGGCCAAAATGAGATCGGTCTGA

Upstream 100 bases:

>100_bases
CCGCCCGAACGGGTGCGCTGGTCCTGATCACGACGCCGTGAACATCGCTTTCGACCGTAACAAATTGAGTTTGGAGCCGA
ATTGCTTCTGAGGAGCGCGT

Downstream 100 bases:

>100_bases
CGATGGATACGGATCACTTCATCAAAACCCTGGCCGCCGACGTCCCGCAGCGCGGGAGGCCGGTCGGACAGGTGTTGGCC
GCGGCGCTGCTGGTGGCGCT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase Sigma Factor SigD; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPIDQSEDIVQEILLAVHLKRHTWDPEAPFAPWL
FAIARNKLIDALRRRGRRVFVNIDDFAETIPSEAAPETLPSGEIARHLEALPQRQREVLQSIAVDSASIKDTANRLSMSE
GAVRVALHRGLAALAAKMRSV

Sequences:

>Translated_181_residues
MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPIDQSEDIVQEILLAVHLKRHTWDPEAPFAPWL
FAIARNKLIDALRRRGRRVFVNIDDFAETIPSEAAPETLPSGEIARHLEALPQRQREVLQSIAVDSASIKDTANRLSMSE
GAVRVALHRGLAALAAKMRSV
>Mature_181_residues
MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPIDQSEDIVQEILLAVHLKRHTWDPEAPFAPWL
FAIARNKLIDALRRRGRRVFVNIDDFAETIPSEAAPETLPSGEIARHLEALPQRQREVLQSIAVDSASIKDTANRLSMSE
GAVRVALHRGLAALAAKMRSV

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20004; Mature: 20004

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPIDQSEDIVQEIL
CCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LAVHLKRHTWDPEAPFAPWLFAIARNKLIDALRRRGRRVFVNIDDFAETIPSEAAPETLP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCC
SGEIARHLEALPQRQREVLQSIAVDSASIKDTANRLSMSEGAVRVALHRGLAALAAKMRS
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
V
C
>Mature Secondary Structure
MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPIDQSEDIVQEIL
CCCCCCCHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LAVHLKRHTWDPEAPFAPWLFAIARNKLIDALRRRGRRVFVNIDDFAETIPSEAAPETLP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCCCCCCCC
SGEIARHLEALPQRQREVLQSIAVDSASIKDTANRLSMSEGAVRVALHRGLAALAAKMRS
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA