Click here to switch to the map view.

The map label for this gene is ygdK [C]

Identifier: 86750627

GI number: 86750627

Start: 4025664

End: 4026092

Strand: Direct

Name: ygdK [C]

Synonym: RPB_3517

Alternate gene names: 86750627

Gene position: 4025664-4026092 (Clockwise)

Preceding gene: 86750626

Following gene: 86750631

Centisome position: 75.5

GC content: 65.97

Gene sequence:

>429_bases
ATGACGATCGACGAAATCAGAGACAATTTCGCGCTGCTGGACGATTGGGACGATCGCTACCGCTACGTGATCGAACTCGG
CCGCACGCTCGATCCGATGCCGGAGGACGAGCACTCCACCGCCAACAAGGTCAATGGCTGCGCCAGCCAGGTCTGGCTGT
CGCGCCGGCTGACGCACAACGCCGACAACCAGCCGGTGCTCAACTATCTCGGCGACAGCGACGCCCACATCGTGCGCGGG
CTGATCGCGATCCTGCTGACGCTGGTGTCCGGCCGTACGCCGCAGCAGATCCTCGCCGCCGAGCCGATCGCGGTGTTCGA
CGAACTCGGCTTCCGCGAGCACCTGACGCCGCAGCGCTCCAACGGCCTGCGCTCGATGATCGAGCGCATCAAAGCCGACG
CCCACGCGACCCTGGCCGCGTCGAGCTGA

Upstream 100 bases:

>100_bases
TCAGACGAGGGTCGCCGATATCGCTTTCGAGCGCCTGCAATACCCTATATCTGTACGACTAGGTTCCGCCGCGGGCCGCG
ACGAGCAGATACGGGTCATG

Downstream 100 bases:

>100_bases
TTCGAACGCGTCATTCCGGGGCGCCGCGCAGCGGCGAGCCCGGAATCCATGTGCGCTGTGTCCGCGTGATCGGCACAGCC
GTTATCGAAACTGGTATCGA

Product: Fe-S metabolism associated SufE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTIDEIRDNFALLDDWDDRYRYVIELGRTLDPMPEDEHSTANKVNGCASQVWLSRRLTHNADNQPVLNYLGDSDAHIVRG
LIAILLTLVSGRTPQQILAAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADAHATLAASS

Sequences:

>Translated_142_residues
MTIDEIRDNFALLDDWDDRYRYVIELGRTLDPMPEDEHSTANKVNGCASQVWLSRRLTHNADNQPVLNYLGDSDAHIVRG
LIAILLTLVSGRTPQQILAAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADAHATLAASS
>Mature_141_residues
TIDEIRDNFALLDDWDDRYRYVIELGRTLDPMPEDEHSTANKVNGCASQVWLSRRLTHNADNQPVLNYLGDSDAHIVRGL
IAILLTLVSGRTPQQILAAEPIAVFDELGFREHLTPQRSNGLRSMIERIKADAHATLAASS

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=132, Percent_Identity=40.1515151515151, Blast_Score=116, Evalue=5e-28,
Organism=Escherichia coli, GI1787969, Length=118, Percent_Identity=40.6779661016949, Blast_Score=97, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15922; Mature: 15791

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEIRDNFALLDDWDDRYRYVIELGRTLDPMPEDEHSTANKVNGCASQVWLSRRLTHN
CCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ADNQPVLNYLGDSDAHIVRGLIAILLTLVSGRTPQQILAAEPIAVFDELGFREHLTPQRS
CCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCCCCC
NGLRSMIERIKADAHATLAASS
CCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIDEIRDNFALLDDWDDRYRYVIELGRTLDPMPEDEHSTANKVNGCASQVWLSRRLTHN
CHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ADNQPVLNYLGDSDAHIVRGLIAILLTLVSGRTPQQILAAEPIAVFDELGFREHLTPQRS
CCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCHHHCCCCCC
NGLRSMIERIKADAHATLAASS
CCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]