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The map label for this gene is nodB [H]

Identifier: 86750621

GI number: 86750621

Start: 4019329

End: 4020369

Strand: Direct

Name: nodB [H]

Synonym: RPB_3511

Alternate gene names: 86750621

Gene position: 4019329-4020369 (Clockwise)

Preceding gene: 86750620

Following gene: 86750622

Centisome position: 75.39

GC content: 69.16

Gene sequence:

>1041_bases
ATGCGTAGAGTTGCAATGTTGACGGCCGGGTGCAGCGCCCTGGCGGTTCTGGTCGGCCTCGGCGCCGGCCGCGCTTATTT
CTCCGCGCCCAGCGCCCCGGCGACGGCCGCGGCCTCCACCGAACTCACCACCGGCGCGATCGCGTCGCGCTGGCCGGCGC
CGACCGCCGAAACCTCCAAAGCGCCGGCGCCGAAGGTCGAGCCGGTCGTCGCCCGCGAGCCCGCGGCAGCGCCGGCCCCC
GCGCCCGCCCCGGCCCCGATGCAGCAGGCCTGCCGCAATCCCAACGCGCTCGGCATCTCGCGCACCGTCGAGATCGACAC
CACCGGCGGCCCGGGCCTCGGCATGTCGCAATATCGCGACTACGACTTTCTGCAGCCCGGCGAAGTCGCCCTGACCTTCG
ACGACGGCCCGTGGCCGGTGAACACGCCCGCCGTGCTCGCCGCGCTGGCGGCGGAATGCGTCAAGGCGGTGTTCTTCCCG
ATCGGCAAACATGCGAGCTGGCATCCGGCGATCCTCAAGCAGGTGATCGCCGCCGGCCACACCGTCGGCTCGCACACCTG
GTCGCACGTCAATCTCGCCGGCAAGCCGTTCGCCGAGGCCAAGACCGAGATCGAGAAAGGCATCAGCGGCGTGGCGCTCG
CCGCCGGTCAGCCGATCTCGCCGTTCTTCCGCTTCCCGCAGCTCCGGCAGACCGCGGACCTCAAGGCGTATCTCGGCGAG
CGCAACGTCGCGGCGTTCTCGATCGACGTCGACAGCGAGGATTTCCGCATTCACAAGCCGGACCAACTGATCGCCGGCAC
GATGGCCAAGCTGAAGAAGACCGGCAAGGGCATCCTGTTGATGCACGATTTCCAGAAGAGCACCGCCGAAGCGCTGCCGG
AATTGCTGTCGCAGCTCAAGGCCGGCGGCTACAGGATCGTGTTCATCACCGCCAAGGACAAGATCGCGACGCTGCCGGAA
TACGACGCGCAGGTCGCCCCGGCGCAGCCGACCGCGAGCAATGCGCGGCCGATCGCCAGCGTGATCCGCACCGTCAAGTA
A

Upstream 100 bases:

>100_bases
CGAACGAAATCGCGGCGCTGACTCGGCGTAACAACCCGGGGTTAATCATTTTCCGAGCAAGTTGATCGCGGTTGGCGGTG
ATCCGGTTCGGGAGTTGGGT

Downstream 100 bases:

>100_bases
TCGTCGTCCCCGACCGGCGAGCGCAGCGGCATCACCGCTGCGCTTTCGGCGTCCGGCTCGCGTCGGCCTCTTAACGAAGC
CTTTTACTTAACGCCCCATT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRRVAMLTAGCSALAVLVGLGAGRAYFSAPSAPATAAASTELTTGAIASRWPAPTAETSKAPAPKVEPVVAREPAAAPAP
APAPAPMQQACRNPNALGISRTVEIDTTGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALAAECVKAVFFP
IGKHASWHPAILKQVIAAGHTVGSHTWSHVNLAGKPFAEAKTEIEKGISGVALAAGQPISPFFRFPQLRQTADLKAYLGE
RNVAAFSIDVDSEDFRIHKPDQLIAGTMAKLKKTGKGILLMHDFQKSTAEALPELLSQLKAGGYRIVFITAKDKIATLPE
YDAQVAPAQPTASNARPIASVIRTVK

Sequences:

>Translated_346_residues
MRRVAMLTAGCSALAVLVGLGAGRAYFSAPSAPATAAASTELTTGAIASRWPAPTAETSKAPAPKVEPVVAREPAAAPAP
APAPAPMQQACRNPNALGISRTVEIDTTGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALAAECVKAVFFP
IGKHASWHPAILKQVIAAGHTVGSHTWSHVNLAGKPFAEAKTEIEKGISGVALAAGQPISPFFRFPQLRQTADLKAYLGE
RNVAAFSIDVDSEDFRIHKPDQLIAGTMAKLKKTGKGILLMHDFQKSTAEALPELLSQLKAGGYRIVFITAKDKIATLPE
YDAQVAPAQPTASNARPIASVIRTVK
>Mature_346_residues
MRRVAMLTAGCSALAVLVGLGAGRAYFSAPSAPATAAASTELTTGAIASRWPAPTAETSKAPAPKVEPVVAREPAAAPAP
APAPAPMQQACRNPNALGISRTVEIDTTGGPGLGMSQYRDYDFLQPGEVALTFDDGPWPVNTPAVLAALAAECVKAVFFP
IGKHASWHPAILKQVIAAGHTVGSHTWSHVNLAGKPFAEAKTEIEKGISGVALAAGQPISPFFRFPQLRQTADLKAYLGE
RNVAAFSIDVDSEDFRIHKPDQLIAGTMAKLKKTGKGILLMHDFQKSTAEALPELLSQLKAGGYRIVFITAKDKIATLPE
YDAQVAPAQPTASNARPIASVIRTVK

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=169, Percent_Identity=28.4023668639053, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 36257; Mature: 36257

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVAMLTAGCSALAVLVGLGAGRAYFSAPSAPATAAASTELTTGAIASRWPAPTAETSK
CCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCHHCCCCCHHCHHHHCCCCCCCCCCC
APAPKVEPVVAREPAAAPAPAPAPAPMQQACRNPNALGISRTVEIDTTGGPGLGMSQYRD
CCCCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHCC
YDFLQPGEVALTFDDGPWPVNTPAVLAALAAECVKAVFFPIGKHASWHPAILKQVIAAGH
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
TVGSHTWSHVNLAGKPFAEAKTEIEKGISGVALAAGQPISPFFRFPQLRQTADLKAYLGE
CCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCC
RNVAAFSIDVDSEDFRIHKPDQLIAGTMAKLKKTGKGILLMHDFQKSTAEALPELLSQLK
CCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
AGGYRIVFITAKDKIATLPEYDAQVAPAQPTASNARPIASVIRTVK
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRRVAMLTAGCSALAVLVGLGAGRAYFSAPSAPATAAASTELTTGAIASRWPAPTAETSK
CCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCHHCCCCCHHCHHHHCCCCCCCCCCC
APAPKVEPVVAREPAAAPAPAPAPAPMQQACRNPNALGISRTVEIDTTGGPGLGMSQYRD
CCCCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHCC
YDFLQPGEVALTFDDGPWPVNTPAVLAALAAECVKAVFFPIGKHASWHPAILKQVIAAGH
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
TVGSHTWSHVNLAGKPFAEAKTEIEKGISGVALAAGQPISPFFRFPQLRQTADLKAYLGE
CCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCC
RNVAAFSIDVDSEDFRIHKPDQLIAGTMAKLKKTGKGILLMHDFQKSTAEALPELLSQLK
CCEEEEEEECCCCCCEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
AGGYRIVFITAKDKIATLPEYDAQVAPAQPTASNARPIASVIRTVK
CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]