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The map label for this gene is 86750611

Identifier: 86750611

GI number: 86750611

Start: 4005281

End: 4006618

Strand: Reverse

Name: 86750611

Synonym: RPB_3501

Alternate gene names: NA

Gene position: 4006618-4005281 (Counterclockwise)

Preceding gene: 86750613

Following gene: 86750609

Centisome position: 75.15

GC content: 69.13

Gene sequence:

>1338_bases
ATGGAGCGTTGGGCAATCGGAATTGCGCTGGCGGTGGTGGCTGCGCTCTGGCTGTCGCCGGCGCGCGCCGAAAAGCGCGT
CGCGCTGGTGATCGGCAATTCCGGCTATCAGAACGTGTCGCGGCTCGACAATCCGAAGAACGACGCGGTGCTGATGGCGG
AGACGCTGAGTGTGATCGGCTTCACGCTGGTCGGCGGCCGCGCCCAGCTCGATCTCGACAAGCCGTCGCTGGATTCCGCG
GTGCAGAATTTCGGCCGACAGATCCAGGGCGCCGACGTCGCGCTATTCTACTTTGCCGGCCACGGCGTGCAGATCAGCGG
CGCCAATTATCTGGTGCCGGTCAACGCCAATCCGACCCGCGAGGCCGACGTCGATTTCCAGATGGTCGACGTCAACGTCG
TGCTGCGGCAGATGCAGGCGGCCGGAACGCGGCTGAAGATCGTCATTCTCGACGCCTGCCGCAACAACCCGTTCGGCGCG
CGAGGACTGCGATCCTCCGAAGGTGGCCTCGCGCAGATGCGCGCGCCCGACGGCACGCTGATTTCCTACGCGACCCAGCC
CGGCAGCGTCGCGCTCGACGGCGGCGATGGCCACAGCCCGTATACGCGCGCGCTGGCGGCGACGGTGAAGCGGGCCGGGC
TCGATCTGTTCCAGACCTTCAATCAGGTCGGCCTCGCGGTGATGCGTGCGACCGGCGGCGCTCAGCAGCCCTGGGTGTCG
TCGTCGCCGATCGACGGCACGTTCTACTTCGTCGCGCCGGCGCTGCCGCTGCCGCCCGCGTCGCCGTCGCCGATGCAGGA
GGCGCGACTGAGCGAGACCCCGCGTCGCGATCCCGATCGCGCGCCGCTGACCGATGCCGGTGCGCTGCGCGAACTGCGCG
ACCGGCTGTACGAACGCAATTTCGATCCCGACGTGCCGGACGACAAAGCCGGCTTGCGCACGGCGATCGCCAAGTTCCAG
GAGAAGGCGGCGCTGCCGCAGACCGGGGAGGCGACCGAAGGCGTGCTCGCGCGGCTGCGGCAGACCGACGATCTGAAGCC
GTGGGGATCGATCGTGTACGACCCGGACAACGAGAAGTGGGGAATGTCCTGGAACCACGCGTCGCGGAAAGCCGCGGTGT
CGGACGCCGGCGCGAAATGCAGCGGCGCGCCGTGCAAGGTCGAACTCAGCTTCTACGGCCAGCGCTGCGGCGCCTTCGCG
GTGTCGGCGATGGCGTGGTCGCTGGTCGACCGCGACAGCGTCCAGGCGGCGAAGGATGCCGCGCTCAGCGCCTGCGGCAA
GTCCGGCAAGCCGTGCCGCGTGATCGGCGCGGTCTGCGCCGACGGCTCCGGCCGCTGA

Upstream 100 bases:

>100_bases
CCCCGTTTGCATTCCGTCGCCTGGAAAACAGACTGTTCTCGGGCCGTCCAAACCGGGTAAGCTGCCGCTGCCGGCACGGG
CTGGTCTGGGTGGAAGCGGC

Downstream 100 bases:

>100_bases
CTCCGGTGGCGGCCGGCCGCTACTGCTTCGACGCGGTCCAGCGGCCGACGCAGCCGTCGGAGCGTCGAAACGATCCGGAG
CCGCTGCGGGCCGAGAAACG

Product: peptidase C14, caspase catalytic subunit p20

Products: NA

Alternate protein names: Caspase Domain Protein; Caspase-Like Domain- And TPR Repeat-Containing Peptidase; Peptidase C; Caspase-Like Domain-Containing Protein; Peptidase Protein; Caspase Domain-Containing Protein; TPR Repeat-Containing Caspace; GUN4-Like Family; Caspase; Peptidylprolyl Isomerase; Caspase-1 P; ICE-Like Protease; Paracaspase

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MERWAIGIALAVVAALWLSPARAEKRVALVIGNSGYQNVSRLDNPKNDAVLMAETLSVIGFTLVGGRAQLDLDKPSLDSA
VQNFGRQIQGADVALFYFAGHGVQISGANYLVPVNANPTREADVDFQMVDVNVVLRQMQAAGTRLKIVILDACRNNPFGA
RGLRSSEGGLAQMRAPDGTLISYATQPGSVALDGGDGHSPYTRALAATVKRAGLDLFQTFNQVGLAVMRATGGAQQPWVS
SSPIDGTFYFVAPALPLPPASPSPMQEARLSETPRRDPDRAPLTDAGALRELRDRLYERNFDPDVPDDKAGLRTAIAKFQ
EKAALPQTGEATEGVLARLRQTDDLKPWGSIVYDPDNEKWGMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFA
VSAMAWSLVDRDSVQAAKDAALSACGKSGKPCRVIGAVCADGSGR

Sequences:

>Translated_445_residues
MERWAIGIALAVVAALWLSPARAEKRVALVIGNSGYQNVSRLDNPKNDAVLMAETLSVIGFTLVGGRAQLDLDKPSLDSA
VQNFGRQIQGADVALFYFAGHGVQISGANYLVPVNANPTREADVDFQMVDVNVVLRQMQAAGTRLKIVILDACRNNPFGA
RGLRSSEGGLAQMRAPDGTLISYATQPGSVALDGGDGHSPYTRALAATVKRAGLDLFQTFNQVGLAVMRATGGAQQPWVS
SSPIDGTFYFVAPALPLPPASPSPMQEARLSETPRRDPDRAPLTDAGALRELRDRLYERNFDPDVPDDKAGLRTAIAKFQ
EKAALPQTGEATEGVLARLRQTDDLKPWGSIVYDPDNEKWGMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFA
VSAMAWSLVDRDSVQAAKDAALSACGKSGKPCRVIGAVCADGSGR
>Mature_445_residues
MERWAIGIALAVVAALWLSPARAEKRVALVIGNSGYQNVSRLDNPKNDAVLMAETLSVIGFTLVGGRAQLDLDKPSLDSA
VQNFGRQIQGADVALFYFAGHGVQISGANYLVPVNANPTREADVDFQMVDVNVVLRQMQAAGTRLKIVILDACRNNPFGA
RGLRSSEGGLAQMRAPDGTLISYATQPGSVALDGGDGHSPYTRALAATVKRAGLDLFQTFNQVGLAVMRATGGAQQPWVS
SSPIDGTFYFVAPALPLPPASPSPMQEARLSETPRRDPDRAPLTDAGALRELRDRLYERNFDPDVPDDKAGLRTAIAKFQ
EKAALPQTGEATEGVLARLRQTDDLKPWGSIVYDPDNEKWGMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFA
VSAMAWSLVDRDSVQAAKDAALSACGKSGKPCRVIGAVCADGSGR

Specific function: Unknown

COG id: COG4249

COG function: function code R; Uncharacterized protein containing caspase domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47302; Mature: 47302

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS ; PS50208 CASPASE_P20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERWAIGIALAVVAALWLSPARAEKRVALVIGNSGYQNVSRLDNPKNDAVLMAETLSVIG
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEHHHHHHHHH
FTLVGGRAQLDLDKPSLDSAVQNFGRQIQGADVALFYFAGHGVQISGANYLVPVNANPTR
HEEECCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCEEEECCCCCCC
EADVDFQMVDVNVVLRQMQAAGTRLKIVILDACRNNPFGARGLRSSEGGLAQMRAPDGTL
CCCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCE
ISYATQPGSVALDGGDGHSPYTRALAATVKRAGLDLFQTFNQVGLAVMRATGGAQQPWVS
EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCCCCCCCCCC
SSPIDGTFYFVAPALPLPPASPSPMQEARLSETPRRDPDRAPLTDAGALRELRDRLYERN
CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
FDPDVPDDKAGLRTAIAKFQEKAALPQTGEATEGVLARLRQTDDLKPWGSIVYDPDNEKW
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCC
GMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFAVSAMAWSLVDRDSVQAAKDA
CCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHH
ALSACGKSGKPCRVIGAVCADGSGR
HHHHCCCCCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MERWAIGIALAVVAALWLSPARAEKRVALVIGNSGYQNVSRLDNPKNDAVLMAETLSVIG
CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCCCEEEHHHHHHHHH
FTLVGGRAQLDLDKPSLDSAVQNFGRQIQGADVALFYFAGHGVQISGANYLVPVNANPTR
HEEECCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEECCCCEEEECCCCCCC
EADVDFQMVDVNVVLRQMQAAGTRLKIVILDACRNNPFGARGLRSSEGGLAQMRAPDGTL
CCCCCEEEEHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCE
ISYATQPGSVALDGGDGHSPYTRALAATVKRAGLDLFQTFNQVGLAVMRATGGAQQPWVS
EEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCCCCCCCCCC
SSPIDGTFYFVAPALPLPPASPSPMQEARLSETPRRDPDRAPLTDAGALRELRDRLYERN
CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
FDPDVPDDKAGLRTAIAKFQEKAALPQTGEATEGVLARLRQTDDLKPWGSIVYDPDNEKW
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCC
GMSWNHASRKAAVSDAGAKCSGAPCKVELSFYGQRCGAFAVSAMAWSLVDRDSVQAAKDA
CCCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHH
ALSACGKSGKPCRVIGAVCADGSGR
HHHHCCCCCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA