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The map label for this gene is pomA [H]

Identifier: 86750475

GI number: 86750475

Start: 3846640

End: 3847413

Strand: Reverse

Name: pomA [H]

Synonym: RPB_3364

Alternate gene names: 86750475

Gene position: 3847413-3846640 (Counterclockwise)

Preceding gene: 86750476

Following gene: 86750474

Centisome position: 72.16

GC content: 60.72

Gene sequence:

>774_bases
ATGGATATCGCCACACTTATCGGCCTGATCGCGGGCGCCGTCGTCGTGTCGTCGCTCATTCTGATGGGCGGCAATTTCGG
AATGTTCTACGACATCCATGCCGTGATCGTCATTTTCGGCGGTTCGTTTGCGGCGACTCTGATCCGCTTTCCTTTGTCGG
CGATGCTGCACGGCCTGCCGCTCGGTGCCAAATTCGCCTTCACGATGAGCAACCTGTCGGCTCGCGACCTGGTCGACGAA
CTGGCCCGGATCGCCGAAATCGCCCGTAAATCCGGGCCGGTGGGGCTGGAAAAAGTCGAAGCCGACGACCCGTTTCTGGC
GAAGGGCATCCGCTACGTCGCCGACGGCTACGACCTCGAATTCATCCGCGACAATCTCGAGCGCGATCGCGACAACTTCC
TGCTGCATCTCAACGAGGGTTCGAAGATCTATCGCGCGATCGGCGACTGCGCGCCGGCGTTCGGCATGATCGGCACGCTG
CTCGGCATGGTGCAGATGTTCTCCAACATGCAGGACCCGTCGAAGCTCGGCCCGTTCATGGCGGTCGCGCTGCTGGCGAC
GCTCTACGGGGCCGTGGTGGCGAACCTTGTCTGTCTTCCGATCGCCGACAAGCTGCACGGCAAGCTGGTCGACGAGGAGA
CCAATCGCACGCTGATCATCGACGGAATCCTGATGATCCGGGACTCCAAGAGTCCAACTCTGGTCAGAGAAATGCTGCTC
GCTTATCTGCCCGAAAAGCACCGTCACGAAGAAGACGAAGGCGTGCCGGCCTAA

Upstream 100 bases:

>100_bases
TCTTTAATGGCGGCTGACTACGGTGAAGCCGCGCAGCGCAGAATGCGTTGCGCCGCCGTCAGCGCGGGCTGGCGCGCGCG
TGCGCGTGTCGGAGTACAAG

Downstream 100 bases:

>100_bases
TCGGAGACGACAGCAGCCGGAAAGCGCGCCATGGCAAAGAAGAAGCGGGAGGAGGCACACGGCGGTCACGGCTGGTTCGT
GACCTTCGCCGATCTGATGG

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MDIATLIGLIAGAVVVSSLILMGGNFGMFYDIHAVIVIFGGSFAATLIRFPLSAMLHGLPLGAKFAFTMSNLSARDLVDE
LARIAEIARKSGPVGLEKVEADDPFLAKGIRYVADGYDLEFIRDNLERDRDNFLLHLNEGSKIYRAIGDCAPAFGMIGTL
LGMVQMFSNMQDPSKLGPFMAVALLATLYGAVVANLVCLPIADKLHGKLVDEETNRTLIIDGILMIRDSKSPTLVREMLL
AYLPEKHRHEEDEGVPA

Sequences:

>Translated_257_residues
MDIATLIGLIAGAVVVSSLILMGGNFGMFYDIHAVIVIFGGSFAATLIRFPLSAMLHGLPLGAKFAFTMSNLSARDLVDE
LARIAEIARKSGPVGLEKVEADDPFLAKGIRYVADGYDLEFIRDNLERDRDNFLLHLNEGSKIYRAIGDCAPAFGMIGTL
LGMVQMFSNMQDPSKLGPFMAVALLATLYGAVVANLVCLPIADKLHGKLVDEETNRTLIIDGILMIRDSKSPTLVREMLL
AYLPEKHRHEEDEGVPA
>Mature_257_residues
MDIATLIGLIAGAVVVSSLILMGGNFGMFYDIHAVIVIFGGSFAATLIRFPLSAMLHGLPLGAKFAFTMSNLSARDLVDE
LARIAEIARKSGPVGLEKVEADDPFLAKGIRYVADGYDLEFIRDNLERDRDNFLLHLNEGSKIYRAIGDCAPAFGMIGTL
LGMVQMFSNMQDPSKLGPFMAVALLATLYGAVVANLVCLPIADKLHGKLVDEETNRTLIIDGILMIRDSKSPTLVREMLL
AYLPEKHRHEEDEGVPA

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 27937; Mature: 27937

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIATLIGLIAGAVVVSSLILMGGNFGMFYDIHAVIVIFGGSFAATLIRFPLSAMLHGLP
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
LGAKFAFTMSNLSARDLVDELARIAEIARKSGPVGLEKVEADDPFLAKGIRYVADGYDLE
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHCCCCHH
FIRDNLERDRDNFLLHLNEGSKIYRAIGDCAPAFGMIGTLLGMVQMFSNMQDPSKLGPFM
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AVALLATLYGAVVANLVCLPIADKLHGKLVDEETNRTLIIDGILMIRDSKSPTLVREMLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHH
AYLPEKHRHEEDEGVPA
HHCCHHHCCCCCCCCCC
>Mature Secondary Structure
MDIATLIGLIAGAVVVSSLILMGGNFGMFYDIHAVIVIFGGSFAATLIRFPLSAMLHGLP
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
LGAKFAFTMSNLSARDLVDELARIAEIARKSGPVGLEKVEADDPFLAKGIRYVADGYDLE
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHCCCCHH
FIRDNLERDRDNFLLHLNEGSKIYRAIGDCAPAFGMIGTLLGMVQMFSNMQDPSKLGPFM
HHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AVALLATLYGAVVANLVCLPIADKLHGKLVDEETNRTLIIDGILMIRDSKSPTLVREMLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHH
AYLPEKHRHEEDEGVPA
HHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]