Click here to switch to the map view.

The map label for this gene is gcdB [H]

Identifier: 86750411

GI number: 86750411

Start: 3770209

End: 3771423

Strand: Reverse

Name: gcdB [H]

Synonym: RPB_3300

Alternate gene names: 86750411

Gene position: 3771423-3770209 (Counterclockwise)

Preceding gene: 86750412

Following gene: 86750410

Centisome position: 70.74

GC content: 61.23

Gene sequence:

>1215_bases
ATGCTACAGCAACTCTTCACGGTCTTTCCCGGCATCGGCACGATGTTCGTGCAGGAGCCGTCAATCGCCTTCGCAAGGCT
CTTCCTGATCGTCGGCGGATTCTTTCTCGCCTATCTCGGCTTCAAGCGCACGCTGGAGCCGCTGATCATGGTGCCGATGG
GCGTTGCGATGATGTGCGTCAATGCCGGCGTGATGTTCCTCGAGGGCAATCACATCGGCACCCTGATGCTCGATCCGATG
ATCTCGGACCCGATCAAGCTCGTCAACGAGATGCAGATCTACTTCCTGCAGCCGGTTTACAACTTCGCGTTCTCGAACTC
GCTGGTCGCCTGCATGCTGTTCTTCGGCATCGGCTCGATGTCGGACATCTCCTTCATTCTCGCCCGTCCCTGGGCGGTGA
TCACCTGCGCGATCTTCGCCGAAATGGGAACCTTCGCAACGCTGGTGATCGGCTACTATTGCGGTCTGACGCCGGGTGAG
GCGGCCGCAGTCGGAACGATCGGCGGCGCCGACGGCCCGATGGTGCTGTTCACCTCGCTGATGCTGGCCAAGGACCTGTT
CGTCCCGATCTCGATCATCGCCTACCTCTATCTGTCGCTGACCTATGCGGGTTATCCGTATCTGATGAAGCTCCTGGTGC
CGAAGAAGTATCGGGCCATGGACGTCGAGATGGAATTCCCGGACGTCTCGCAGAAGGCGAAGTTCGTCTTCACCATCGTC
GCCGCCGCGCTGCTCTGCCTCCTGCTGCCCGTCGCGTCGCCGCTGATCCTGTCGTTCTTCCTCGGCGTCGCCATCAAGGA
AGCCCAGATCGAAGTCTACCAGGATCTGCTCGAGAAGACCGTCACCTACATGTCGACGCTGATGCTCGGCCTGGTGCTCG
GCGTGCTGTGCGAAGCCTCGACGCTGCTCGACAGCCGCGTGCTGATCCTGCTGGTGCTCGGCATCACCGCGCTGCTGATC
TCCGGTGTCGGTGGTCTGATCGGCGGCTGGTTCGTCTATCTGATCAGCAAGAAGGCCTTCAATCCGCTGATCGGCATCGC
CGGCGTGTCCTGCATCCCGACGACCGCCAAGCTCGCTCAGAAGATCGCCGCCGAGGACAATCCCTACGCGATGATCTTCC
CGGTGGCGATGGGCGCCAACATCTGCGGCGTGATCGTCTCCGCCATCGCGGTCGGCATCTTCGCCTCGACGATCTCCCTC
GTGGCACCGCACTGA

Upstream 100 bases:

>100_bases
AATCTCATACGCCGTGATCGGCGTCATCGTTCTGCTCAGCAAGTTGCTCGGCGAAAACGAATCTTCCGAAACCGCCTGAT
CGAATACGGGACAACCTCAG

Downstream 100 bases:

>100_bases
GCCGCATCGGGAAAGCTGGAGAACGATCATGGTCCGCTTCGCTGACATCATCCCGAACGCAAAGCGCCTCGCTGCGGTCG
AGCAGGCCGATGGCATCGGG

Product: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MLQQLFTVFPGIGTMFVQEPSIAFARLFLIVGGFFLAYLGFKRTLEPLIMVPMGVAMMCVNAGVMFLEGNHIGTLMLDPM
ISDPIKLVNEMQIYFLQPVYNFAFSNSLVACMLFFGIGSMSDISFILARPWAVITCAIFAEMGTFATLVIGYYCGLTPGE
AAAVGTIGGADGPMVLFTSLMLAKDLFVPISIIAYLYLSLTYAGYPYLMKLLVPKKYRAMDVEMEFPDVSQKAKFVFTIV
AAALLCLLLPVASPLILSFFLGVAIKEAQIEVYQDLLEKTVTYMSTLMLGLVLGVLCEASTLLDSRVLILLVLGITALLI
SGVGGLIGGWFVYLISKKAFNPLIGIAGVSCIPTTAKLAQKIAAEDNPYAMIFPVAMGANICGVIVSAIAVGIFASTISL
VAPH

Sequences:

>Translated_404_residues
MLQQLFTVFPGIGTMFVQEPSIAFARLFLIVGGFFLAYLGFKRTLEPLIMVPMGVAMMCVNAGVMFLEGNHIGTLMLDPM
ISDPIKLVNEMQIYFLQPVYNFAFSNSLVACMLFFGIGSMSDISFILARPWAVITCAIFAEMGTFATLVIGYYCGLTPGE
AAAVGTIGGADGPMVLFTSLMLAKDLFVPISIIAYLYLSLTYAGYPYLMKLLVPKKYRAMDVEMEFPDVSQKAKFVFTIV
AAALLCLLLPVASPLILSFFLGVAIKEAQIEVYQDLLEKTVTYMSTLMLGLVLGVLCEASTLLDSRVLILLVLGITALLI
SGVGGLIGGWFVYLISKKAFNPLIGIAGVSCIPTTAKLAQKIAAEDNPYAMIFPVAMGANICGVIVSAIAVGIFASTISL
VAPH
>Mature_404_residues
MLQQLFTVFPGIGTMFVQEPSIAFARLFLIVGGFFLAYLGFKRTLEPLIMVPMGVAMMCVNAGVMFLEGNHIGTLMLDPM
ISDPIKLVNEMQIYFLQPVYNFAFSNSLVACMLFFGIGSMSDISFILARPWAVITCAIFAEMGTFATLVIGYYCGLTPGE
AAAVGTIGGADGPMVLFTSLMLAKDLFVPISIIAYLYLSLTYAGYPYLMKLLVPKKYRAMDVEMEFPDVSQKAKFVFTIV
AAALLCLLLPVASPLILSFFLGVAIKEAQIEVYQDLLEKTVTYMSTLMLGLVLGVLCEASTLLDSRVLILLVLGITALLI
SGVGGLIGGWFVYLISKKAFNPLIGIAGVSCIPTTAKLAQKIAAEDNPYAMIFPVAMGANICGVIVSAIAVGIFASTISL
VAPH

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 43411; Mature: 43411

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00358 RIBOSOMAL_L5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQLFTVFPGIGTMFVQEPSIAFARLFLIVGGFFLAYLGFKRTLEPLIMVPMGVAMMCV
CHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAGVMFLEGNHIGTLMLDPMISDPIKLVNEMQIYFLQPVYNFAFSNSLVACMLFFGIGSM
HCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SDISFILARPWAVITCAIFAEMGTFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFTSL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHH
MLAKDLFVPISIIAYLYLSLTYAGYPYLMKLLVPKKYRAMDVEMEFPDVSQKAKFVFTIV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHHHHH
AAALLCLLLPVASPLILSFFLGVAIKEAQIEVYQDLLEKTVTYMSTLMLGLVLGVLCEAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLDSRVLILLVLGITALLISGVGGLIGGWFVYLISKKAFNPLIGIAGVSCIPTTAKLAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH
KIAAEDNPYAMIFPVAMGANICGVIVSAIAVGIFASTISLVAPH
HHHCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQQLFTVFPGIGTMFVQEPSIAFARLFLIVGGFFLAYLGFKRTLEPLIMVPMGVAMMCV
CHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAGVMFLEGNHIGTLMLDPMISDPIKLVNEMQIYFLQPVYNFAFSNSLVACMLFFGIGSM
HCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SDISFILARPWAVITCAIFAEMGTFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFTSL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHH
MLAKDLFVPISIIAYLYLSLTYAGYPYLMKLLVPKKYRAMDVEMEFPDVSQKAKFVFTIV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHEEEEEECCCCCCHHHHHHHHHH
AAALLCLLLPVASPLILSFFLGVAIKEAQIEVYQDLLEKTVTYMSTLMLGLVLGVLCEAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLLDSRVLILLVLGITALLISGVGGLIGGWFVYLISKKAFNPLIGIAGVSCIPTTAKLAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHH
KIAAEDNPYAMIFPVAMGANICGVIVSAIAVGIFASTISLVAPH
HHHCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]