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The map label for this gene is yciR [C]

Identifier: 86750361

GI number: 86750361

Start: 3714504

End: 3716525

Strand: Reverse

Name: yciR [C]

Synonym: RPB_3250

Alternate gene names: 86750361

Gene position: 3716525-3714504 (Counterclockwise)

Preceding gene: 86750362

Following gene: 86750360

Centisome position: 69.71

GC content: 64.64

Gene sequence:

>2022_bases
ATGCTTCAATTCTTCCACGCATGGGATGGCCAACATGCAGGGCTCGTTGGTCTCGGGCTCGCGCTGTGTCTGTTGGGCGC
CATGGCTGCGGCCGGAGCGCTGCGCTTCACCCGGATCAGTTCGGGGCGGGTGCGTAGAGGCTGGGTGATCGCGGCGTGCG
TCGCGGCGGGCTGCTGCCTTGCAAGCGCCCTGACCGTTGGGCTGCTGTTGGCCGTTCCCTCCGAGCCAGTTGTTCGCGAT
GTCGCGCTGGCGATCGTCATCGTGACGATCCTCGGGATGACGGTGACCGTCGCCATGGCCGTGTGGTCCGGCGCGAAGGG
GACTAACAACGTCCGCAGCGCCCTTGCCGAACGCGTCATGGTGCTCGACGCCATAGTGCAGAAAGACTCGCACGGTTTTT
GCCTGTTCAGTCCCGATGGGCGGCTGGAGGCGTGGAACGAGGCCTTTCTCGACATCTATGCCATCCCTCCCGGCCAGCCG
CTCGCCGGCGCCACGCTGGCCGAACTGGTCGAGATCCTCCGCGTCTGCGGCAATCAGCTCACGGATATCGAACAACTGTC
GGAGATCAAAGCCGCGAGCGCCGGCGGTGGACCATCCGAAATAGTCGTCGAGCTAAGCGATGGCCGCCATATCAGGCTCG
AATTTCGGCCGTTGCCGAACGGCGGCTGGATCGCCAAGCAGGCCGACGTCACCGACTACAAGATGGCCGAACAGCGTTTC
GCCTATGTCACGCTGCACGATATCGCCACCGGTCTCCCCAATCGCGCGGCATTCAATCAGCGGATCGGGCAGAGTCTGGC
GGTCGCCCGCGAGCGGCACGCGAGTTTCGCTGTGATCCGGCTCGGAATCGACCGGTTCAAGGAGATCAACGATGTCTTCG
GCCAGTCGGTCGGCGACGCCGTGCTCGCCAAGATGGCGGCGCTGCTGACCGAGACATGCCACTGGGGCTTTCTGGCGCGG
CCGGGTGGTGACGAGTTCTCGATCGTGACGCAACCGGATCAGGCCGCCGATGCCTTGCAGGAGATCTGCAGCCAGGTCTT
GCGACTTTGCGACGTCGAGTTCGACATCGATGGCCATGCGATCCGGGTCGGGTCGACCGCGGGCGTCAGCATCTATCCCC
GCGACGGCGACGACGCGGAGACCCTGATCGCGCATGCCGACGTCGCGCTGTATCGAGCGAAGAACGAACGGCGCGGCAGC
GTCTGCGTGTTCGAGCCGGCGATGGACCTGCAGATTCGCGAGAAGCGCGCCTTGCAGCGCGAACTTGCATTGGCGTTGCA
GAACGACGAGTTCGAGCTTCACTACCAGCCCCAGGCGACCACCAAGGGCGAGATCGTCGGCTTCGAGGCGCTGCTGCGCT
GGCGCCATCCGGTCCGCGGCATGGTGTCGCCCGCGGCCTTCATTCCGCTCGCGGAAGAAACCGGGCTGATCGGAGCGATC
GACGAATGGGTGCTCCGCAGCGCCTGCCGCGAAGCCGCCTCCTGGCCGAAACCGCTGGCCATCGCGGTCAACCTCTCGCC
GCTCGATTTCGGGCGGCTCGATGTGCCGGCGTTGATCCTGCAGGTGCTGCTCGAAACCGGCCTCGACCCGAAGCGACTCG
AGGTCGAGATTACCGAGGGCGTGCTGATCGACGACTTCAGTGGCGCCATCGGGATCCTCCGGCGGATCAAGAATTGCGGC
GTTCGCGTCGCGATGGACGATTTCGGGGCCGGCTATTCGTCGCTGTCTTATCTGCAGTCGTTTCCGTTCGACAAGATCAA
GATCGATCAAGCATTCACGCGCAAACTCGAGATCAACCCCGATTCCGCGGCGATCGTCGAGGCGATCCTGAGCCTCGCGC
ATCGTCTGAATCTGCCGGTGATTGCCGAAGGCGTCGAGACCGAGAGCCAACTGGCATTTCTGGCCAGCGTCGGCTGCGGC
GAGGTGCAGGGCTATCTGATCGGCAAACCTGGCCCGATTGCGCAATATCGTCATCTGACGGGCGGCGCCACGCCCGAGCC
GCAGCTCGCTCAGGCCGGCTGA

Upstream 100 bases:

>100_bases
GCGTGACCCGCATCCGGGGGGCCTCCTTTCGGATCGACCCTTAAGCAATAGGCAAAACTACGGTGCGATGGTGAGGCATC
TTCGCTGATCTGGATCAGGC

Downstream 100 bases:

>100_bases
ATTTGCTGCACTGCAGCGCGAGGGGCGCTCGATCTGTCCCGTCGCGTGGAATGCGGGGCCTTGATGCGCGCGGACACGGG
CAATTGTCCGATGGAGCCTT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MLQFFHAWDGQHAGLVGLGLALCLLGAMAAAGALRFTRISSGRVRRGWVIAACVAAGCCLASALTVGLLLAVPSEPVVRD
VALAIVIVTILGMTVTVAMAVWSGAKGTNNVRSALAERVMVLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQP
LAGATLAELVEILRVCGNQLTDIEQLSEIKAASAGGGPSEIVVELSDGRHIRLEFRPLPNGGWIAKQADVTDYKMAEQRF
AYVTLHDIATGLPNRAAFNQRIGQSLAVARERHASFAVIRLGIDRFKEINDVFGQSVGDAVLAKMAALLTETCHWGFLAR
PGGDEFSIVTQPDQAADALQEICSQVLRLCDVEFDIDGHAIRVGSTAGVSIYPRDGDDAETLIAHADVALYRAKNERRGS
VCVFEPAMDLQIREKRALQRELALALQNDEFELHYQPQATTKGEIVGFEALLRWRHPVRGMVSPAAFIPLAEETGLIGAI
DEWVLRSACREAASWPKPLAIAVNLSPLDFGRLDVPALILQVLLETGLDPKRLEVEITEGVLIDDFSGAIGILRRIKNCG
VRVAMDDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINPDSAAIVEAILSLAHRLNLPVIAEGVETESQLAFLASVGCG
EVQGYLIGKPGPIAQYRHLTGGATPEPQLAQAG

Sequences:

>Translated_673_residues
MLQFFHAWDGQHAGLVGLGLALCLLGAMAAAGALRFTRISSGRVRRGWVIAACVAAGCCLASALTVGLLLAVPSEPVVRD
VALAIVIVTILGMTVTVAMAVWSGAKGTNNVRSALAERVMVLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQP
LAGATLAELVEILRVCGNQLTDIEQLSEIKAASAGGGPSEIVVELSDGRHIRLEFRPLPNGGWIAKQADVTDYKMAEQRF
AYVTLHDIATGLPNRAAFNQRIGQSLAVARERHASFAVIRLGIDRFKEINDVFGQSVGDAVLAKMAALLTETCHWGFLAR
PGGDEFSIVTQPDQAADALQEICSQVLRLCDVEFDIDGHAIRVGSTAGVSIYPRDGDDAETLIAHADVALYRAKNERRGS
VCVFEPAMDLQIREKRALQRELALALQNDEFELHYQPQATTKGEIVGFEALLRWRHPVRGMVSPAAFIPLAEETGLIGAI
DEWVLRSACREAASWPKPLAIAVNLSPLDFGRLDVPALILQVLLETGLDPKRLEVEITEGVLIDDFSGAIGILRRIKNCG
VRVAMDDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINPDSAAIVEAILSLAHRLNLPVIAEGVETESQLAFLASVGCG
EVQGYLIGKPGPIAQYRHLTGGATPEPQLAQAG
>Mature_673_residues
MLQFFHAWDGQHAGLVGLGLALCLLGAMAAAGALRFTRISSGRVRRGWVIAACVAAGCCLASALTVGLLLAVPSEPVVRD
VALAIVIVTILGMTVTVAMAVWSGAKGTNNVRSALAERVMVLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQP
LAGATLAELVEILRVCGNQLTDIEQLSEIKAASAGGGPSEIVVELSDGRHIRLEFRPLPNGGWIAKQADVTDYKMAEQRF
AYVTLHDIATGLPNRAAFNQRIGQSLAVARERHASFAVIRLGIDRFKEINDVFGQSVGDAVLAKMAALLTETCHWGFLAR
PGGDEFSIVTQPDQAADALQEICSQVLRLCDVEFDIDGHAIRVGSTAGVSIYPRDGDDAETLIAHADVALYRAKNERRGS
VCVFEPAMDLQIREKRALQRELALALQNDEFELHYQPQATTKGEIVGFEALLRWRHPVRGMVSPAAFIPLAEETGLIGAI
DEWVLRSACREAASWPKPLAIAVNLSPLDFGRLDVPALILQVLLETGLDPKRLEVEITEGVLIDDFSGAIGILRRIKNCG
VRVAMDDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINPDSAAIVEAILSLAHRLNLPVIAEGVETESQLAFLASVGCG
EVQGYLIGKPGPIAQYRHLTGGATPEPQLAQAG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=38.1062355658199, Blast_Score=297, Evalue=2e-81,
Organism=Escherichia coli, GI87081921, Length=529, Percent_Identity=29.8676748582231, Blast_Score=208, Evalue=9e-55,
Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=31.7191283292978, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1788502, Length=253, Percent_Identity=33.9920948616601, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=37.603305785124, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=32.4324324324324, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.469387755102, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081845, Length=234, Percent_Identity=34.6153846153846, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=34.3220338983051, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788849, Length=263, Percent_Identity=33.0798479087452, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1787055, Length=292, Percent_Identity=31.8493150684932, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=31.5789473684211, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788381, Length=458, Percent_Identity=25.1091703056769, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=36.3057324840764, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081881, Length=227, Percent_Identity=30.8370044052863, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=193, Percent_Identity=29.5336787564767, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=32, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787816, Length=192, Percent_Identity=32.2916666666667, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=190, Percent_Identity=30, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789650, Length=418, Percent_Identity=21.2918660287081, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72416; Mature: 72416

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFFHAWDGQHAGLVGLGLALCLLGAMAAAGALRFTRISSGRVRRGWVIAACVAAGCCL
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHH
ASALTVGLLLAVPSEPVVRDVALAIVIVTILGMTVTVAMAVWSGAKGTNNVRSALAERVM
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQPLAGATLAELVEILRVCGNQL
HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
TDIEQLSEIKAASAGGGPSEIVVELSDGRHIRLEFRPLPNGGWIAKQADVTDYKMAEQRF
CCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCCEEECCCCCHHHHHHHHE
AYVTLHDIATGLPNRAAFNQRIGQSLAVARERHASFAVIRLGIDRFKEINDVFGQSVGDA
EEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCHHHH
VLAKMAALLTETCHWGFLARPGGDEFSIVTQPDQAADALQEICSQVLRLCDVEFDIDGHA
HHHHHHHHHHHHHCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEECCCCCE
IRVGSTAGVSIYPRDGDDAETLIAHADVALYRAKNERRGSVCVFEPAMDLQIREKRALQR
EEECCCCCEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHH
ELALALQNDEFELHYQPQATTKGEIVGFEALLRWRHPVRGMVSPAAFIPLAEETGLIGAI
HHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHEEECCCCCCCCHHH
DEWVLRSACREAASWPKPLAIAVNLSPLDFGRLDVPALILQVLLETGLDPKRLEVEITEG
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
VLIDDFSGAIGILRRIKNCGVRVAMDDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINP
EEEECCCHHHHHHHHHHHCCEEEEEHHCCCCHHHHHHHHHCCCCEEEECHHHHEEEECCC
DSAAIVEAILSLAHRLNLPVIAEGVETESQLAFLASVGCGEVQGYLIGKPGPIAQYRHLT
CHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCC
GGATPEPQLAQAG
CCCCCCCCCCCCC
>Mature Secondary Structure
MLQFFHAWDGQHAGLVGLGLALCLLGAMAAAGALRFTRISSGRVRRGWVIAACVAAGCCL
CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHH
ASALTVGLLLAVPSEPVVRDVALAIVIVTILGMTVTVAMAVWSGAKGTNNVRSALAERVM
HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VLDAIVQKDSHGFCLFSPDGRLEAWNEAFLDIYAIPPGQPLAGATLAELVEILRVCGNQL
HHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
TDIEQLSEIKAASAGGGPSEIVVELSDGRHIRLEFRPLPNGGWIAKQADVTDYKMAEQRF
CCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCCEEECCCCCHHHHHHHHE
AYVTLHDIATGLPNRAAFNQRIGQSLAVARERHASFAVIRLGIDRFKEINDVFGQSVGDA
EEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCHHHH
VLAKMAALLTETCHWGFLARPGGDEFSIVTQPDQAADALQEICSQVLRLCDVEFDIDGHA
HHHHHHHHHHHHHCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCEECCCCCE
IRVGSTAGVSIYPRDGDDAETLIAHADVALYRAKNERRGSVCVFEPAMDLQIREKRALQR
EEECCCCCEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHH
ELALALQNDEFELHYQPQATTKGEIVGFEALLRWRHPVRGMVSPAAFIPLAEETGLIGAI
HHHHHCCCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHEEECCCCCCCCHHH
DEWVLRSACREAASWPKPLAIAVNLSPLDFGRLDVPALILQVLLETGLDPKRLEVEITEG
HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
VLIDDFSGAIGILRRIKNCGVRVAMDDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLEINP
EEEECCCHHHHHHHHHHHCCEEEEEHHCCCCHHHHHHHHHCCCCEEEECHHHHEEEECCC
DSAAIVEAILSLAHRLNLPVIAEGVETESQLAFLASVGCGEVQGYLIGKPGPIAQYRHLT
CHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCC
GGATPEPQLAQAG
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]