| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is braF [H]
Identifier: 86750278
GI number: 86750278
Start: 3624577
End: 3625332
Strand: Reverse
Name: braF [H]
Synonym: RPB_3167
Alternate gene names: 86750278
Gene position: 3625332-3624577 (Counterclockwise)
Preceding gene: 86750279
Following gene: 86750277
Centisome position: 68.0
GC content: 64.02
Gene sequence:
>756_bases TTGGCTGATGACATCATCCTTGAAACACACGGGTTGACCAAGGAGTTCGCCGGCTTCTTCGCCGTGCGCGACGTCAATCT ACGGGTCCGGCGCGGCCAGATTCACGCGCTGATTGGCCCGAACGGCGCCGGCAAGACCACCTGCTTCAATCTGCTGACCA AGTTCCTGCATCCGTCGGCCGGCCAGATCCTCTACAAGGGCCAGGACATCACCGCGATGGCTCCGGCCGGTGTGGCGCGG CTCGGGCTGGTGCGCTCGTTCCAGATTTCCGCGGTGTTTCCGCATCTCACGGCGCTCGAGAATGTCCGCGTCGCGCTGCA GCGCCAGCACGGCAGTTCGTTCGACTTCTGGCGCTCGAAGAGCGTGCTCGACCGCTACAACCACCGGGCGCGCGAATTGC TCGACGACGTCGGCCTGAGCGAATTCTCCGACACGCCGGCGGTCGAGATGCCCTACGGCCGCAAGCGCGCGCTGGAGATC GCCACCACGCTGGCGCTCGATCCGGAAATGATGCTGCTCGACGAGCCGATGGCCGGCATGGGCCACGAGGACATCGACAA GATCGCCGCGCTGATCAAGCGGATCTCGGCGAAGTACACCATTCTGATGGTCGAGCACAATCTCAGCGTCGTCGCCAATC TGTCCGATGTCATCACCGTGCTGACCCGCGGGCAGGTGCTGGCCGAGGGCCACTACAAAGACCTGACCCAGGACGAGCGG GTCAAGGAAGCCTATCTCGGAGCGGGTCATGGCTGA
Upstream 100 bases:
>100_bases GACGGGTCAGGAGCGCCTGCCAGGGCGCCCGGCACCGTTCAGCAACAACAAGTCGGCCGTGCGGTGGCTCCGCAGCGGGA CCGACAGGGGGAAAATTTTC
Downstream 100 bases:
>100_bases GACGACGACTTTGGACCGCGCCGCGTCGGCGGCCACCGGCAAGCCACTGCTGAGCGTGCGCGATCTGCAGGCGTGGTACG GCGAATCCCACATCCTGCAC
Product: ABC transporter related
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MADDIILETHGLTKEFAGFFAVRDVNLRVRRGQIHALIGPNGAGKTTCFNLLTKFLHPSAGQILYKGQDITAMAPAGVAR LGLVRSFQISAVFPHLTALENVRVALQRQHGSSFDFWRSKSVLDRYNHRARELLDDVGLSEFSDTPAVEMPYGRKRALEI ATTLALDPEMMLLDEPMAGMGHEDIDKIAALIKRISAKYTILMVEHNLSVVANLSDVITVLTRGQVLAEGHYKDLTQDER VKEAYLGAGHG
Sequences:
>Translated_251_residues MADDIILETHGLTKEFAGFFAVRDVNLRVRRGQIHALIGPNGAGKTTCFNLLTKFLHPSAGQILYKGQDITAMAPAGVAR LGLVRSFQISAVFPHLTALENVRVALQRQHGSSFDFWRSKSVLDRYNHRARELLDDVGLSEFSDTPAVEMPYGRKRALEI ATTLALDPEMMLLDEPMAGMGHEDIDKIAALIKRISAKYTILMVEHNLSVVANLSDVITVLTRGQVLAEGHYKDLTQDER VKEAYLGAGHG >Mature_250_residues ADDIILETHGLTKEFAGFFAVRDVNLRVRRGQIHALIGPNGAGKTTCFNLLTKFLHPSAGQILYKGQDITAMAPAGVARL GLVRSFQISAVFPHLTALENVRVALQRQHGSSFDFWRSKSVLDRYNHRARELLDDVGLSEFSDTPAVEMPYGRKRALEIA TTLALDPEMMLLDEPMAGMGHEDIDKIAALIKRISAKYTILMVEHNLSVVANLSDVITVLTRGQVLAEGHYKDLTQDERV KEAYLGAGHG
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=216, Percent_Identity=28.7037037037037, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI27881501, Length=222, Percent_Identity=30.1801801801802, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI30795238, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=29.0322580645161, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI9961252, Length=218, Percent_Identity=25.6880733944954, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4505771, Length=218, Percent_Identity=25.6880733944954, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI148612844, Length=232, Percent_Identity=27.1551724137931, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI255708477, Length=232, Percent_Identity=27.1551724137931, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=27.3148148148148, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI171184400, Length=222, Percent_Identity=25.2252252252252, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI42741659, Length=218, Percent_Identity=24.7706422018349, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI47078218, Length=251, Percent_Identity=25.8964143426295, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=251, Percent_Identity=25.8964143426295, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=23.943661971831, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI150417984, Length=221, Percent_Identity=28.5067873303167, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27477115, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI27262624, Length=220, Percent_Identity=25.4545454545455, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI27262626, Length=220, Percent_Identity=25.4545454545455, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=225, Percent_Identity=25.3333333333333, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=37.1541501976285, Blast_Score=159, Evalue=1e-40, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=29.2372881355932, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1789593, Length=247, Percent_Identity=31.1740890688259, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1790525, Length=236, Percent_Identity=29.6610169491525, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI48995001, Length=238, Percent_Identity=29.8319327731092, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081782, Length=232, Percent_Identity=30.1724137931034, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI87081709, Length=253, Percent_Identity=28.8537549407115, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1788210, Length=237, Percent_Identity=29.957805907173, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=28.2700421940928, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1788225, Length=242, Percent_Identity=29.3388429752066, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790190, Length=238, Percent_Identity=26.890756302521, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789032, Length=235, Percent_Identity=25.9574468085106, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=26.3157894736842, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=28.9719626168224, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=25.2252252252252, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788472, Length=235, Percent_Identity=23.8297872340426, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=27.710843373494, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=25.2136752136752, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=25.7383966244726, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=27.4193548387097, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=25.3164556962025, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI87081834, Length=224, Percent_Identity=26.7857142857143, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787089, Length=240, Percent_Identity=25.4166666666667, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=24.5454545454545, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=24.4444444444444, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=21.4285714285714, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=26.7857142857143, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786803, Length=240, Percent_Identity=24.1666666666667, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789586, Length=240, Percent_Identity=28.3333333333333, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=27.3504273504274, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1790739, Length=233, Percent_Identity=26.1802575107296, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787972, Length=236, Percent_Identity=25, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=24.4343891402715, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787112, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786345, Length=241, Percent_Identity=24.896265560166, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787759, Length=254, Percent_Identity=25.1968503937008, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786872, Length=228, Percent_Identity=24.5614035087719, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI48994997, Length=234, Percent_Identity=23.9316239316239, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789962, Length=223, Percent_Identity=25.1121076233184, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=25.462962962963, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787105, Length=205, Percent_Identity=24.8780487804878, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787143, Length=224, Percent_Identity=25.4464285714286, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788506, Length=216, Percent_Identity=24.537037037037, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788644, Length=241, Percent_Identity=26.9709543568465, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787500, Length=221, Percent_Identity=22.1719457013575, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=24.5833333333333, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI71983510, Length=218, Percent_Identity=30.2752293577982, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71983516, Length=218, Percent_Identity=30.2752293577982, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71983523, Length=218, Percent_Identity=30.2752293577982, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17510237, Length=234, Percent_Identity=31.1965811965812, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17565586, Length=217, Percent_Identity=29.4930875576037, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17565938, Length=217, Percent_Identity=26.7281105990783, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71992290, Length=220, Percent_Identity=26.8181818181818, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17558664, Length=216, Percent_Identity=25, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI193211017, Length=220, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=24.8868778280543, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996809, Length=220, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71984940, Length=235, Percent_Identity=26.8085106382979, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=216, Percent_Identity=23.1481481481481, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI28573571, Length=247, Percent_Identity=28.3400809716599, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI116007184, Length=212, Percent_Identity=30.188679245283, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI221500365, Length=212, Percent_Identity=30.188679245283, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI28573573, Length=241, Percent_Identity=28.6307053941909, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI24648314, Length=237, Percent_Identity=25.7383966244726, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24666092, Length=224, Percent_Identity=27.2321428571429, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI28571209, Length=241, Percent_Identity=24.4813278008299, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=24.5535714285714, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=24, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI221512771, Length=229, Percent_Identity=24.0174672489083, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24641565, Length=216, Percent_Identity=25, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI17136662, Length=217, Percent_Identity=27.1889400921659, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076682, Length=219, Percent_Identity=25.1141552511416, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076684, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581617, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581615, Length=219, Percent_Identity=25.1141552511416, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=208, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI281363262, Length=225, Percent_Identity=26.2222222222222, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24653245, Length=225, Percent_Identity=26.2222222222222, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27707; Mature: 27576
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDIILETHGLTKEFAGFFAVRDVNLRVRRGQIHALIGPNGAGKTTCFNLLTKFLHPSA CCCCEEEECCCCHHHHHHEEEEEECEEEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCC GQILYKGQDITAMAPAGVARLGLVRSFQISAVFPHLTALENVRVALQRQHGSSFDFWRSK CCEEECCCCEEEECCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH SVLDRYNHRARELLDDVGLSEFSDTPAVEMPYGRKRALEIATTLALDPEMMLLDEPMAGM HHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCC GHEDIDKIAALIKRISAKYTILMVEHNLSVVANLSDVITVLTRGQVLAEGHYKDLTQDER CHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHCCCEEECCCCCCCCHHHH VKEAYLGAGHG HHHHHHCCCCC >Mature Secondary Structure ADDIILETHGLTKEFAGFFAVRDVNLRVRRGQIHALIGPNGAGKTTCFNLLTKFLHPSA CCCEEEECCCCHHHHHHEEEEEECEEEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCC GQILYKGQDITAMAPAGVARLGLVRSFQISAVFPHLTALENVRVALQRQHGSSFDFWRSK CCEEECCCCEEEECCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH SVLDRYNHRARELLDDVGLSEFSDTPAVEMPYGRKRALEIATTLALDPEMMLLDEPMAGM HHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCC GHEDIDKIAALIKRISAKYTILMVEHNLSVVANLSDVITVLTRGQVLAEGHYKDLTQDER CHHHHHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHHHHHHHCCCEEECCCCCCCCHHHH VKEAYLGAGHG HHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]