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The map label for this gene is fecI [C]

Identifier: 86750239

GI number: 86750239

Start: 3574363

End: 3574872

Strand: Reverse

Name: fecI [C]

Synonym: RPB_3128

Alternate gene names: 86750239

Gene position: 3574872-3574363 (Counterclockwise)

Preceding gene: 86750240

Following gene: 86750238

Centisome position: 67.05

GC content: 61.18

Gene sequence:

>510_bases
ATGATCGAGTCGGCCTGGGTGACGCTGCGTCGACGCCTCGTCGAGAGCTATGACGAGCTTCGGATCCTATTGACGCGGCG
CCTCGGCTCCGAGGACCTCGCGCGCGAGACCTTGCACGAGACATGGCTTCGCCTCGACCGGGTTGACGATGTTTCGGTGT
TGCGTAACCCGGACGCCTATCTCGCGCGCGTGGCGCTTAATCTGGCAACCGATCGGCAACGCTTGGAAACCCGCCGGGCG
CGCAAGTCCGACGTCAATGCCATCCTCGACGATATCGTCGAGGACGCGCCCGGCCAGGCGGAGAGACTGGAATCACGTCG
CGATCTGGCGATCTTCGAAGAGGCGATCGGGGAACTGTCCGAGCGTCGTCGAGACATTTTGATTGCAGCGCGGCTCGATC
AGGAGCCGCATCAGAAGATCGCCGACCGGCTCGGCATTTCGAAGCGGATGGTCCAGATCGAGCTGAAATATGCGCTGCAA
TATTGCAAAAGCCGTCTGGAGCGAAAATAG

Upstream 100 bases:

>100_bases
GCCCCCCCGATGTGACCGGCGATTGTGCTTCGGCTGATCGAATGCGGGCCAATCAATAAATGGCAGCGGACATACCAACC
GATATACCTGCGGCAGCCGC

Downstream 100 bases:

>100_bases
CGCCATGATGTTTCGCTTCGGGCTTGCGGAAATCGTCATAACGGGTAGGGCAGGCGGCGATCGCGACCTGACGCGGGAGG
GCGACGCATTCGCATGACCG

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; RNA Polymerase Sigma Factor FecI; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma Factor FecI Family; Extracytoplasmic Function Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; Fec I Like Protein; ECF-Sigma Factor; FecI-Like Protein; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDDVSVLRNPDAYLARVALNLATDRQRLETRRA
RKSDVNAILDDIVEDAPGQAERLESRRDLAIFEEAIGELSERRRDILIAARLDQEPHQKIADRLGISKRMVQIELKYALQ
YCKSRLERK

Sequences:

>Translated_169_residues
MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDDVSVLRNPDAYLARVALNLATDRQRLETRRA
RKSDVNAILDDIVEDAPGQAERLESRRDLAIFEEAIGELSERRRDILIAARLDQEPHQKIADRLGISKRMVQIELKYALQ
YCKSRLERK
>Mature_169_residues
MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDDVSVLRNPDAYLARVALNLATDRQRLETRRA
RKSDVNAILDDIVEDAPGQAERLESRRDLAIFEEAIGELSERRRDILIAARLDQEPHQKIADRLGISKRMVQIELKYALQ
YCKSRLERK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19862; Mature: 19862

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDDVSVLRNPDAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
LARVALNLATDRQRLETRRARKSDVNAILDDIVEDAPGQAERLESRRDLAIFEEAIGELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ERRRDILIAARLDQEPHQKIADRLGISKRMVQIELKYALQYCKSRLERK
HHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDDVSVLRNPDAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
LARVALNLATDRQRLETRRARKSDVNAILDDIVEDAPGQAERLESRRDLAIFEEAIGELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ERRRDILIAARLDQEPHQKIADRLGISKRMVQIELKYALQYCKSRLERK
HHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA