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The map label for this gene is recJ [H]

Identifier: 86750079

GI number: 86750079

Start: 3372757

End: 3374598

Strand: Reverse

Name: recJ [H]

Synonym: RPB_2962

Alternate gene names: 86750079

Gene position: 3374598-3372757 (Counterclockwise)

Preceding gene: 86750080

Following gene: 86750078

Centisome position: 63.29

GC content: 69.82

Gene sequence:

>1842_bases
ATGACCTTGCCCGCATCCGCATTGCCGCCTGATCCCGTGTCGGCGTTTCTCGGCGTGACCCGTTCCGCCACCGGCAAGCT
GTGGCGCGACCGGCTGGATGCGCGCGGCACCGCCAAGGCGCAGGCGATCGCGCAGCGCTATCAATTGCCGGAGATGCTGG
CGCGGGTGATCGCCGGGCGCGGCATCGAGATCGACGCGGTCGCCGATTTCCTCGACCCGACCATCCGCAAGCTGATGCCC
GATCCATCGACGGTGACGCAGATGGAGGCCGGCGCCAGCCGCATCGCCGACGCCGCGACGAAACGCGAGAAGGTGGCGAT
CTTCGGCGATTACGACGTCGACGGCGCGACCTCGGCCGCATTGCTGGCCTGGCATCTGCGGCATTGCGGGCTCGATCCGC
TGATCCACATTCCCGACCGCATCTTCGAGGGCTACGGCCCGAATGTCGACGCCATCCGGATGCTGGCGGACAAGGGCGCG
ACGCTGCTGATCACGGTGGATTGCGGCACCACCAGCCTCGAGCCGCTGGCCGAGGCGCGCCGGCTCGGCATGAGCGTGGT
GGTGATCGATCATCACCAGACCGCCGACGAACTGCCCGAGGTCGACGCGCTGATCAATCCGAACCGGCCCGATGATCTGT
CCGGCCTCGGCCATCTCGCCGCCGTCGGGCTGGTGATGATGACGCTGGTCGCGGTCAATCGCGAGCTGCGCCATCGCGGC
TTCTGGACGCTGGAGCGGCCGGAGCCGAATCTGCTCGACATGCTGCATCACGTCGCGCTCGGCACTGTCGCCGACGTGGC
GCCCCTGATCGGGCTCAACCGCGCCTTCGTCGCCAAGGGGCTGATCGCGCTGCGCCGCCGCGATCATGTCGGCCACACCG
CGCTGATGGACGTGGCGCGGCTCAACGGGCCACCCGAAGTCTGGCATCTCGGCTTCATGCTCGGGCCGCGGATCAATGCC
GGCGGCCGGATCGGCCGCGCCGATCTCGGGGTGCGGCTGCTGCTCGAAGGTGATGTTTCGGAAGCCGCGCGGATCGCCGC
CGAACTCGATCGCCTCAACACCGAGCGCCGCGTCATCGAGCAACACGCCGAAGCGCAGGCGGAGGCCGAGGCGATCGCCG
CGCTCGGCCTCGAGGACAAGGGCGCGGTGATCGTCACCGCGTCCGAGGGCTGGCATCCCGGCGTGGTCGGCCTCGTCGCG
TCGCGGCTGAAGGAAAAATTCGGCCGGCCGGCGTTCGCCATCGCGCTGGAGCCCGGCGGCATCGGCACCGGCTCGGGCCG
CTCGATCGGCGGCGTCGATCTCGGCCGCGCGGTGCGCAACGCCGTGACCGAGGGCATCCTGATGAAAGGCGGCGGCCACG
CGATGGCCGCCGGCGTGACGCTGCGCAAGGAACGCCTCGCCGAATTCCGCGGCTGGCTCGAAACCGCGCTCGCCGCCGAC
GTCGCCAAGTCGCGCCACGTCAACGAATTGTCGATCGACGGCGCGGTGTCGGCACGCGGTATCACGCCGGAATTCGCCGC
CACGCTCAATCGCGCCGGGCCGTTCGGCGCCGGCAATCCCGAGCCGGTCATCGCGCTGCCGGCGCATCAACTGGTCTATG
CCGACGAAGTCGGGCAGGCGCATCTGCGGCTGCGCTTCAAATCCGGCGACGGCGCCATCGTCAACGGCATTGCATTCCGC
AGCGTCGGGCAGAAGCTCGGGCAGGCGCTCGCCGAGAACCGCGGCCATCCGCTGCATGTCGCCGGCTCGCTCGCGATCGA
CCGCTGGCAGGGCGCCGAACGCGTGCAGTTTCGCGTGATCGACGTCGCGGTGCCGGATCCCGGGCCGGCGATGATCAGAT
AG

Upstream 100 bases:

>100_bases
GGCGAGCGCCTCAGGATGACGACGCGGTGCAGGTTGCGAGGCCCGCCGGCAAGAGGCATCGGTTTGCCTCGCCCTCGCTT
CGTGCTTATCTCCACGCGCC

Downstream 100 bases:

>100_bases
TCGACCGACGCGGTGATCACGCGGTACCTCGTACTAATACGGGGTATGCCTGCGGAGTGTCCAAAGGCGGGAACTATCAA
CGGCCGATTAACTGCACTCT

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MTLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGRGIEIDAVADFLDPTIRKLMP
DPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAALLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGA
TLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRG
FWTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEVWHLGFMLGPRINA
GGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVA
SRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAAD
VAKSRHVNELSIDGAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGDGAIVNGIAFR
SVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVIDVAVPDPGPAMIR

Sequences:

>Translated_613_residues
MTLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGRGIEIDAVADFLDPTIRKLMP
DPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAALLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGA
TLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRG
FWTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEVWHLGFMLGPRINA
GGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVA
SRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAAD
VAKSRHVNELSIDGAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGDGAIVNGIAFR
SVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVIDVAVPDPGPAMIR
>Mature_612_residues
TLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGRGIEIDAVADFLDPTIRKLMPD
PSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAALLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGAT
LLITVDCGTTSLEPLAEARRLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRGF
WTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVARLNGPPEVWHLGFMLGPRINAG
GRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIEQHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVAS
RLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAADV
AKSRHVNELSIDGAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQAHLRLRFKSGDGAIVNGIAFRS
VGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVIDVAVPDPGPAMIR

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=571, Percent_Identity=35.2014010507881, Blast_Score=259, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 65177; Mature: 65046

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCC
GIEIDAVADFLDPTIRKLMPDPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAA
CCCHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGATLLITVDCGTTSLEPLAEAR
HHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
RLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRG
HCCCEEEEEECCCCHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FWTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVAR
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
LNGPPEVWHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIE
CCCCHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHH
QHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGG
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
IGTGSGRSIGGVDLGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAAD
CCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
VAKSRHVNELSIDGAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQA
HHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHCCCCE
HLRLRFKSGDGAIVNGIAFRSVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVI
EEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHCCCCCEEEEEEE
DVAVPDPGPAMIR
EEECCCCCCCCCC
>Mature Secondary Structure 
TLPASALPPDPVSAFLGVTRSATGKLWRDRLDARGTAKAQAIAQRYQLPEMLARVIAGR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHCCC
GIEIDAVADFLDPTIRKLMPDPSTVTQMEAGASRIADAATKREKVAIFGDYDVDGATSAA
CCCHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHH
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRMLADKGATLLITVDCGTTSLEPLAEAR
HHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
RLGMSVVVIDHHQTADELPEVDALINPNRPDDLSGLGHLAAVGLVMMTLVAVNRELRHRG
HCCCEEEEEECCCCHHHCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FWTLERPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKGLIALRRRDHVGHTALMDVAR
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
LNGPPEVWHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNTERRVIE
CCCCHHHEEEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHH
QHAEAQAEAEAIAALGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPAFAIALEPGG
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
IGTGSGRSIGGVDLGRAVRNAVTEGILMKGGGHAMAAGVTLRKERLAEFRGWLETALAAD
CCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
VAKSRHVNELSIDGAVSARGITPEFAATLNRAGPFGAGNPEPVIALPAHQLVYADEVGQA
HHHHCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHCCCCE
HLRLRFKSGDGAIVNGIAFRSVGQKLGQALAENRGHPLHVAGSLAIDRWQGAERVQFRVI
EEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHCCCCCEEEEEEE
DVAVPDPGPAMIR
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]