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The map label for this gene is arpC [H]

Identifier: 86750020

GI number: 86750020

Start: 3309023

End: 3310471

Strand: Reverse

Name: arpC [H]

Synonym: RPB_2903

Alternate gene names: 86750020

Gene position: 3310471-3309023 (Counterclockwise)

Preceding gene: 86750026

Following gene: 86750019

Centisome position: 62.09

GC content: 67.36

Gene sequence:

>1449_bases
ATGAGCACCATATTGCGCTACCTTGGTCGGTCCGTGAGGATGGTTGCCGCCTCGGCGTTCGTCCTCGGCGCCGGCGGCTG
CATCCTGACCAAGGACCTGCCGGACCCGGCGCTGGATCTGCCGCCGCGCTACAAGTCGGCGTCGCTGAACACCGTCGACG
CGCCGCCGGCGCTCGACTGGTGGCGCGGCTTCCGTTCGGCCGAGCTGACGCAATTGATGGAAGAGGCGCAGACCGTCAAT
CTCGACATTGCCGCGGCGACCGCGCGCATCCTGCAGGCGGACGCCCAGGCGCGGATCACCGGGGCGGCGCTGCTGCCCTC
GATCACCGGCAACGGCAGCGGCTCGCAGAACAAGACCTCGGGCAGCAATGTCTCGAACACCACGATCGCCGGCCGCCGCT
ACGCCACCTATTCGGCATCGCTGAGCGCGAGCTACGAAATCGATTTCTGGGGCAAAAATCACGACGCCGCGCTGGCGGCC
GAGGAGACCGCGACCGCCACGAGGTTCGACCGCGACGTGGTCGCGCTGACCACGATGGCGAGCGTCGCCAACGCCTATTT
CCAGGTGCTGGCGACCCAGGACCGGCTCCGCACCTCGCGCGAGAACATCGCCAGCGCGCAGCGGATTCTCGACGCCATCA
AGCAGCGGCTCGCCGCCGGCACCGGTAGCGATCTCGACGTCGCCCAGCAGGAGAGCGTGCTGGCGAATCAGCGCGCCGCG
GTGCCGCCGCTGCAATTGACGCTGGCGCAGAACATCAACACGCTGGCGACGCTGGTGTCCCGTCCGCCGGAAAGCGTGAA
GATCGTCGGCGGCTCGCTGAACCGGATCTCGTCGCCGCGGGTGACGCCGGGGCTGCCGTCCGAACTGCTGACGCAGCGGC
CGGACATCCGCCGCCAGGAGGCGCAGCTCGCGTCCGCGACGGCCAATGTCGGCAGCGCGCGGGCGCAGTTCTTCCCGAGC
ATTCAATTGACCGGGCAGGGCGGCTATCAGAGCGCGGTGCTGGCCTCGCTGTTCACGCCGCAGGCGACCTTCTCCAGCCT
CGCGGCCGGGCTGACCCAGCCGATCTTCGACGGCGGCCGCATCCAGGGCAATTTCGACCTGACCCGGGCGCAGCAGGAGG
AACTGCTGCAGACCTACCGCAAGACCGTGGTGTCGGCCTTCGCCGACGTCGACAACGCGCTCGAATCGATCAAGCAGAAC
ACCGAGCGGCTGCGTCTGCAGCGACAGGTGGTGGCGTCGTCGCGGCGGGCTTTCAATTTGGCCGAACAGCAACTACGTGC
AGGAACGGCCGACATCGTCACCGTTCTCAACACGCAACTGACACTGTTCACGGCGGAAGATGCGCTGATCCAGACGCAAT
TGGCGCGCTATCTGGCGATCGTCAGCCTGTTTCAGGCGCTCGGGGGCGGCTGGGAGCCGAGGATGGAAAGACCGCTCAAT
GCTCTTTAA

Upstream 100 bases:

>100_bases
TCGTTTTGCAAGTGGCTGGCAAGAGGCGTCGTCCGTCGGAATTGATTCCGGCGCGGGGTGCGTGGCGAAACGCCGCGCCC
TGCGATGAGTCGCGGCCCGC

Downstream 100 bases:

>100_bases
GCCGGAGACCAACGACGCGTCCGGCACCGGGCCCGGCGCAAACAGTCTGGCGTCGCGCGCCCGGCGGCGGACGGTGTCGT
TGCTGGTGACCGCGATCATC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MSTILRYLGRSVRMVAASAFVLGAGGCILTKDLPDPALDLPPRYKSASLNTVDAPPALDWWRGFRSAELTQLMEEAQTVN
LDIAAATARILQADAQARITGAALLPSITGNGSGSQNKTSGSNVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAA
EETATATRFDRDVVALTTMASVANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAA
VPPLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQEAQLASATANVGSARAQFFPS
IQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGRIQGNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQN
TERLRLQRQVVASSRRAFNLAEQQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPRMERPLN
AL

Sequences:

>Translated_482_residues
MSTILRYLGRSVRMVAASAFVLGAGGCILTKDLPDPALDLPPRYKSASLNTVDAPPALDWWRGFRSAELTQLMEEAQTVN
LDIAAATARILQADAQARITGAALLPSITGNGSGSQNKTSGSNVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAA
EETATATRFDRDVVALTTMASVANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAA
VPPLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQEAQLASATANVGSARAQFFPS
IQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGRIQGNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQN
TERLRLQRQVVASSRRAFNLAEQQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPRMERPLN
AL
>Mature_481_residues
STILRYLGRSVRMVAASAFVLGAGGCILTKDLPDPALDLPPRYKSASLNTVDAPPALDWWRGFRSAELTQLMEEAQTVNL
DIAAATARILQADAQARITGAALLPSITGNGSGSQNKTSGSNVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAAE
ETATATRFDRDVVALTTMASVANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAAV
PPLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQEAQLASATANVGSARAQFFPSI
QLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGRIQGNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQNT
ERLRLQRQVVASSRRAFNLAEQQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPRMERPLNA
L

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=455, Percent_Identity=29.6703296703297, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI2367348, Length=483, Percent_Identity=23.1884057971014, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51720; Mature: 51589

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILRYLGRSVRMVAASAFVLGAGGCILTKDLPDPALDLPPRYKSASLNTVDAPPALDW
CHHHHHHHCHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
WRGFRSAELTQLMEEAQTVNLDIAAATARILQADAQARITGAALLPSITGNGSGSQNKTS
HHCCCHHHHHHHHHHHHHCCEEHHHHHHHHHHHCCHHHEEHHHHCCCCCCCCCCCCCCCC
GSNVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAAEETATATRFDRDVVALTTMA
CCCCCCCEECCCEEEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHCCHHHHHHHHH
SVANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
VPPLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQE
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCCCCHHHHHCCCCHHHHH
AQLASATANVGSARAQFFPSIQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGR
HHHHHHHHCCCCHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCE
IQGNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQRQVVASSRRAFNL
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPRMERPLN
HHHHHHCCHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCC
AL
CC
>Mature Secondary Structure 
STILRYLGRSVRMVAASAFVLGAGGCILTKDLPDPALDLPPRYKSASLNTVDAPPALDW
HHHHHHHCHHHHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
WRGFRSAELTQLMEEAQTVNLDIAAATARILQADAQARITGAALLPSITGNGSGSQNKTS
HHCCCHHHHHHHHHHHHHCCEEHHHHHHHHHHHCCHHHEEHHHHCCCCCCCCCCCCCCCC
GSNVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAAEETATATRFDRDVVALTTMA
CCCCCCCEECCCEEEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHCCHHHHHHHHH
SVANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
VPPLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQE
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCCCCHHHHHCCCCHHHHH
AQLASATANVGSARAQFFPSIQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGR
HHHHHHHHCCCCHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCE
IQGNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQRQVVASSRRAFNL
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEQQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPRMERPLN
HHHHHHCCHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCC
AL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]