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The map label for this gene is mdcF [H]

Identifier: 86749961

GI number: 86749961

Start: 3237978

End: 3238931

Strand: Reverse

Name: mdcF [H]

Synonym: RPB_2844

Alternate gene names: 86749961

Gene position: 3238931-3237978 (Counterclockwise)

Preceding gene: 86749963

Following gene: 86749959

Centisome position: 60.75

GC content: 64.99

Gene sequence:

>954_bases
ATGATCGACATTCTGAACCTCGCGCTTCCGTATTTCGGGCTGATCTTCGTCGGCTTCGCCTGCGGCCGGCTGAAGCGCCT
GCCGGAAAACGGCCTCGCCTGGATGAACTTCTTCCTGCTCTACGTGTCGCTGCCGGCGCTGTTCTTCCGGATCATGTCGA
AGACGCCGTTCGAGGAACTCAACAACCTGCCATTCGTGCTGGCGACCACATTCGGCACGGCGTGCGCGTTCTTCATTTCC
GGCTTGATCGGCCGCACCGTCGGCGGCCTGTCGCTGCGCGAAACGACGATGGCGAGCCTCGCGGGTGGCTACGGCAATAT
CGGCTATATGGGCCCGGGACTGGCGCTCGCCGTATTGGGACCCAAAGCCGCGGTGCCGGTGGCGCTGATCTTCTGCTTCG
ACAGCATCTTTCTGTTTTCGATCGTGCCGTTGGCAATGGCGCTGACCGCCGGCGAGCGCCGGCCGCTGCTGCCGACCATC
GTCCACGTGGTGCGCGAGATCGTGCTGCATCCGTTGATCGTCGCGGCCTATTGCGGCGCTGCCGCAGCTGCCTTCCACGT
GCAGGTGCCAACTGCGGTCGATAACACGCTGCAGTTCTTGCAGAACGCCGCCGCGCCGGTGGCGCTGTTCACGCTCGGCG
TGACGGTGGCGCTGCGTCCGTTCGGCCGGGTCCCGTGGGAGATTCCGGGCATCGTCGCGGTCAAGCTGCTGCTGCATCCG
CTGATCGTGTTCGGCCTGATGCTGGCATGCGGGCCGTTCACGCTGGAATGGGCCGCCACCGCGGTGCTGATGGCGTCGCT
TCCGCCGGCGCTCAACGTCTTCGTGATCGCCCGGCAGTACAACACCTGGGTCGAGCCGGCGTCTGTCGCCGTGCTGATCG
GCACCTTCGTCTCGGTGGTGACGCTGACGACGGTGATGTGGCTGATCAGGACCGGACAGCTGCCGTTATCGTGA

Upstream 100 bases:

>100_bases
TGCTAGTGCGAAACCCGGCTTTCCGCTCGCCGGCGCGCCGCGTCCATCTCCCCTTTACCGGTCGATCATCCCCGCCGCCG
GCCTTCCTCAGCAGTCCTGA

Downstream 100 bases:

>100_bases
ACATCTTCCTGAGCATGATCTGATCCGAAAACCGGTCGCCACTTTTCGGGATCATGCTCTACAGCGACCGCCAGAACGGA
GACAGGCCTTCGCGCATCGC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MIDILNLALPYFGLIFVGFACGRLKRLPENGLAWMNFFLLYVSLPALFFRIMSKTPFEELNNLPFVLATTFGTACAFFIS
GLIGRTVGGLSLRETTMASLAGGYGNIGYMGPGLALAVLGPKAAVPVALIFCFDSIFLFSIVPLAMALTAGERRPLLPTI
VHVVREIVLHPLIVAAYCGAAAAAFHVQVPTAVDNTLQFLQNAAAPVALFTLGVTVALRPFGRVPWEIPGIVAVKLLLHP
LIVFGLMLACGPFTLEWAATAVLMASLPPALNVFVIARQYNTWVEPASVAVLIGTFVSVVTLTTVMWLIRTGQLPLS

Sequences:

>Translated_317_residues
MIDILNLALPYFGLIFVGFACGRLKRLPENGLAWMNFFLLYVSLPALFFRIMSKTPFEELNNLPFVLATTFGTACAFFIS
GLIGRTVGGLSLRETTMASLAGGYGNIGYMGPGLALAVLGPKAAVPVALIFCFDSIFLFSIVPLAMALTAGERRPLLPTI
VHVVREIVLHPLIVAAYCGAAAAAFHVQVPTAVDNTLQFLQNAAAPVALFTLGVTVALRPFGRVPWEIPGIVAVKLLLHP
LIVFGLMLACGPFTLEWAATAVLMASLPPALNVFVIARQYNTWVEPASVAVLIGTFVSVVTLTTVMWLIRTGQLPLS
>Mature_317_residues
MIDILNLALPYFGLIFVGFACGRLKRLPENGLAWMNFFLLYVSLPALFFRIMSKTPFEELNNLPFVLATTFGTACAFFIS
GLIGRTVGGLSLRETTMASLAGGYGNIGYMGPGLALAVLGPKAAVPVALIFCFDSIFLFSIVPLAMALTAGERRPLLPTI
VHVVREIVLHPLIVAAYCGAAAAAFHVQVPTAVDNTLQFLQNAAAPVALFTLGVTVALRPFGRVPWEIPGIVAVKLLLHP
LIVFGLMLACGPFTLEWAATAVLMASLPPALNVFVIARQYNTWVEPASVAVLIGTFVSVVTLTTVMWLIRTGQLPLS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33932; Mature: 33932

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDILNLALPYFGLIFVGFACGRLKRLPENGLAWMNFFLLYVSLPALFFRIMSKTPFEEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
NNLPFVLATTFGTACAFFISGLIGRTVGGLSLRETTMASLAGGYGNIGYMGPGLALAVLG
CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
PKAAVPVALIFCFDSIFLFSIVPLAMALTAGERRPLLPTIVHVVREIVLHPLIVAAYCGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAAAFHVQVPTAVDNTLQFLQNAAAPVALFTLGVTVALRPFGRVPWEIPGIVAVKLLLHP
HHHHEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LIVFGLMLACGPFTLEWAATAVLMASLPPALNVFVIARQYNTWVEPASVAVLIGTFVSVV
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEEEEEEHHCCCCCHHHHHHHHHHHHHHH
TLTTVMWLIRTGQLPLS
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIDILNLALPYFGLIFVGFACGRLKRLPENGLAWMNFFLLYVSLPALFFRIMSKTPFEEL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
NNLPFVLATTFGTACAFFISGLIGRTVGGLSLRETTMASLAGGYGNIGYMGPGLALAVLG
CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC
PKAAVPVALIFCFDSIFLFSIVPLAMALTAGERRPLLPTIVHVVREIVLHPLIVAAYCGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAAAFHVQVPTAVDNTLQFLQNAAAPVALFTLGVTVALRPFGRVPWEIPGIVAVKLLLHP
HHHHEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
LIVFGLMLACGPFTLEWAATAVLMASLPPALNVFVIARQYNTWVEPASVAVLIGTFVSVV
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHEEEEEEEHHCCCCCHHHHHHHHHHHHHHH
TLTTVMWLIRTGQLPLS
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]