| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is pyrG [H]
Identifier: 86749907
GI number: 86749907
Start: 3179030
End: 3180661
Strand: Reverse
Name: pyrG [H]
Synonym: RPB_2790
Alternate gene names: 86749907
Gene position: 3180661-3179030 (Counterclockwise)
Preceding gene: 86749908
Following gene: 86749903
Centisome position: 59.66
GC content: 64.46
Gene sequence:
>1632_bases ATGGCGCGGTATATTTTCATCACCGGCGGCGTGGTCTCCTCGCTCGGCAAGGGTCTCGCATCAGCGGCACTCGGCGCGCT GCTGCAGGCGCGAGGCTACAAGGTCCGCCTTCGCAAGCTCGATCCCTATCTCAATCTCGATCCCGGGACGATGTCGCCGT ATCAGCACGGCGAAGTGTTCGTGACCGACGACGGCGCCGAGACCGATCTCGATCTCGGCCATTACGAACGGTTCACCGGG CGGCCCGCCACCCGGCAGGACAACATCACCACCGGTCGGATCTATCAGGACATCCTGACCAAGGAACGCCGCGGCGACTA TCTCGGTGCCACCATCCAGGTGGTCCCGCACGTCACCAACGCGATCAAGGACTTCATCGTCGATTCCAACGACGGCTACG ATTTCGTGCTGGTCGAGATCGGCGGCACCGTCGGCGACATCGAAGGCCTGCCGTTCTTCGAGGCGATCCGACAGATCAAG AACGATCTGCCGCGCGGCGACGTGATCTACATTCACCTGACGCTGCTGCCCTACATCCCGAGCGCCGGCGAATTGAAGAC CAAGCCGACCCAGCATTCGGTCAAGGAGCTGCGTTCGATCGGCATCCAGCCCGACATCCTGCTGTGCCGCACCGACCGTC CGATCCCGAAAGAGGAACGGCGCAAGCTCGGGCTGTTCTGCAACGTCCGCGAAAGCGCGGTGATCGAGGCGCGCGACGCC GACAGCATTTATGCTGTGCCGGAGGCGTATCACGCCGCAGGCCTCGACGACGAAGTGCTGGCGGCATTTGCGATTGCGGC CGAACAGCCGCCGGCGCTGGAGCGCTGGCATCAGATCAACGAGCGTATCCGCAATCCTGAAGGCGCGGTGACGATCGCCA TCGTCGGCAAATACACCGGGATGAAGGACGCCTACAAGTCGCTGATCGAGGCGCTGTCGCACGGCGGCATCGCCAACAAG GTCCAGGTCAAGCTCGACTGGATCGAGAGCGAAGTGTTCGAGAACGAGGACCCGGCGCCGTTCCTCGAGCACGTCAACGG AATCCTGGTGCCCGGCGGCTTCGGTCAGCGCGGCGCCGAGGGCAAGATCAAGGCGGCGCAGTTCGCCCGCGAACGCGACG TGCCGTATTTCGGCATCTGCTTCGGCATGCAGATGGCGGTGATCGAGGCGGCGCGCAATCTCGCCGGCATCGAGCAAGCC AACTCGACCGAATTCGGCCCGACGGCGGAGCCGCTGGTCGGCCTGATGACGGAATGGCTGCGCGGCAACGAGTTGGAGCG GCGCTCCAACGCCGGCGACCTCGGCGGGACGATGCGGCTCGGCGCCTATCCGGCGGCGCTGAAGCGCGGCAGCCGGGTGT CGAAGATCTACGGCGACGTGCTGGAGATTTCAGAGCGCCACCGCCATCGCTACGAGGTCAACACCGCCTACAAGGACCGG CTCGAACAGCACGGCCTGCGCTTCTCCGGCATGTCACCGGACGGTGTGCTGCCGGAGATCGTCGAATACGAGGATCATCC GTGGTTCATCGGGGTGCAGTTCCACCCCGAACTGAAATCACGCCCGTTCGAGCCGCATCCGCTGTTCTCGTCCTTCATCG AAGCGGCGCTGGTGCGCAGCCGGCTGGTGTAG
Upstream 100 bases:
>100_bases GCGCTGATCTTTCAGCGTCACCCACAGGCATTTCGAAGTTCGCCCATTAGGGACGAATCGCTTTGGCGAATCGGACCGAG GGCCTTAAAGGTAGGGTCCC
Downstream 100 bases:
>100_bases TTTCCATCACTTCGGGCAGCCCGCCGTGGAATCGCCCGCGCGTGCCATCGGCTTGCCGTTGATGAAGACGTTGCTGCCGC CGCCGACCACCACGCCGCCG
Product: CTP synthetase
Products: NA
Alternate protein names: CTP synthetase; UTP--ammonia ligase [H]
Number of amino acids: Translated: 543; Mature: 542
Protein sequence:
>543_residues MARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTG RPATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTNAIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIK NDLPRGDVIYIHLTLLPYIPSAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDA DSIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTGMKDAYKSLIEALSHGGIANK VQVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAEGKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQA NSTEFGPTAEPLVGLMTEWLRGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDR LEQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRSRLV
Sequences:
>Translated_543_residues MARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTG RPATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTNAIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIK NDLPRGDVIYIHLTLLPYIPSAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDA DSIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTGMKDAYKSLIEALSHGGIANK VQVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAEGKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQA NSTEFGPTAEPLVGLMTEWLRGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDR LEQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRSRLV >Mature_542_residues ARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGR PATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTNAIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIKN DLPRGDVIYIHLTLLPYIPSAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDAD SIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTGMKDAYKSLIEALSHGGIANKV QVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAEGKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQAN STEFGPTAEPLVGLMTEWLRGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDRL EQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRSRLV
Specific function: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen [H]
COG id: COG0504
COG function: function code F; CTP synthase (UTP-ammonia lyase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Homo sapiens, GI148491070, Length=559, Percent_Identity=44.0071556350626, Blast_Score=481, Evalue=1e-136, Organism=Homo sapiens, GI28559085, Length=561, Percent_Identity=43.49376114082, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI28559083, Length=561, Percent_Identity=43.49376114082, Blast_Score=470, Evalue=1e-132, Organism=Homo sapiens, GI221316689, Length=561, Percent_Identity=43.49376114082, Blast_Score=470, Evalue=1e-132, Organism=Escherichia coli, GI1789142, Length=537, Percent_Identity=56.610800744879, Blast_Score=602, Evalue=1e-173, Organism=Caenorhabditis elegans, GI25148299, Length=610, Percent_Identity=37.2131147540984, Blast_Score=402, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6322563, Length=571, Percent_Identity=40.2802101576182, Blast_Score=434, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319432, Length=567, Percent_Identity=40.2116402116402, Blast_Score=430, Evalue=1e-121, Organism=Drosophila melanogaster, GI24664469, Length=559, Percent_Identity=44.1860465116279, Blast_Score=466, Evalue=1e-131, Organism=Drosophila melanogaster, GI21357815, Length=505, Percent_Identity=43.3663366336634, Blast_Score=401, Evalue=1e-112,
Paralogues:
None
Copy number: 480 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004468 - InterPro: IPR017456 - InterPro: IPR017926 - InterPro: IPR000991 [H]
Pfam domain/function: PF06418 CTP_synth_N; PF00117 GATase [H]
EC number: =6.3.4.2 [H]
Molecular weight: Translated: 60275; Mature: 60144
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00442 GATASE_TYPE_I ; PS00214 FABP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVF CCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGRPATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTN EECCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH AIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIKNDLPRGDVIYIHLTLLPYIP HHHHHEECCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCC SAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDA CCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCEEEECCCCEEEEECCC DSIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTG CCEEECCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC MKDAYKSLIEALSHGGIANKVQVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAE HHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHCCCCCCHHHHHCCCEEECCCCCCCCCC GKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQANSTEFGPTAEPLVGLMTEWL CCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH RGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDR CCCCHHHHCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHH LEQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRS HHHCCCEECCCCCCCCCCHHHCCCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHH RLV HCC >Mature Secondary Structure ARYIFITGGVVSSLGKGLASAALGALLQARGYKVRLRKLDPYLNLDPGTMSPYQHGEVF CEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCEEE VTDDGAETDLDLGHYERFTGRPATRQDNITTGRIYQDILTKERRGDYLGATIQVVPHVTN EECCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHH AIKDFIVDSNDGYDFVLVEIGGTVGDIEGLPFFEAIRQIKNDLPRGDVIYIHLTLLPYIP HHHHHEECCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCC SAGELKTKPTQHSVKELRSIGIQPDILLCRTDRPIPKEERRKLGLFCNVRESAVIEARDA CCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCCCEEEECCCCEEEEECCC DSIYAVPEAYHAAGLDDEVLAAFAIAAEQPPALERWHQINERIRNPEGAVTIAIVGKYTG CCEEECCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC MKDAYKSLIEALSHGGIANKVQVKLDWIESEVFENEDPAPFLEHVNGILVPGGFGQRGAE HHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHCCCCCCHHHHHCCCEEECCCCCCCCCC GKIKAAQFARERDVPYFGICFGMQMAVIEAARNLAGIEQANSTEFGPTAEPLVGLMTEWL CCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH RGNELERRSNAGDLGGTMRLGAYPAALKRGSRVSKIYGDVLEISERHRHRYEVNTAYKDR CCCCHHHHCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCHHHHHH LEQHGLRFSGMSPDGVLPEIVEYEDHPWFIGVQFHPELKSRPFEPHPLFSSFIEAALVRS HHHCCCEECCCCCCCCCCHHHCCCCCCEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHH RLV HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]