| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is nagZ [H]
Identifier: 86749865
GI number: 86749865
Start: 3131522
End: 3132547
Strand: Reverse
Name: nagZ [H]
Synonym: RPB_2748
Alternate gene names: 86749865
Gene position: 3132547-3131522 (Counterclockwise)
Preceding gene: 86749866
Following gene: 86749864
Centisome position: 58.75
GC content: 65.89
Gene sequence:
>1026_bases ATGAGTTCGCGCGCCTTCATCACCGGGATATCCGGCCTTGGCCTCACAGACGACGAGCGCGGATTTATCCGTGAATCGCG TCCGTGGGGTTTCATCCTGTTCAAGCGCAACGTCGACAATCCGGCGCAAGTTTCCGGATTGGTTCAGCAATTGCGCACCG AGGTGGGCCAGCCGGACGCCCCGGTCCTGATCGATCAAGAGGGCGGGCGGGTGCAGCGGCTCGGCCCGCCGCATTGGCCG GTATATCCGCGCGGCGCGCTGTTCTCGGCACTTTACGATATTGATTCGCAGCTCGGCCTCGCAGCGGCGCGTCTCAGCGC CCGGCTGATCGCGTCCGACCTGTTCGATCTCGGCATCACCGTCGACTGCTTGCCGCTGGCCGACGTGCCGGTTTCGGGCG CCGATGCCGTGATCGGCGATCGCGCCTATGGCTTCGCGGCCGCCAAGGTGGCGGCGATCGCCCGTGCGGTCACCGAGGGC CTGGAGCAGGGCTCCGTGCTGCCGGTTCTCAAACATATCCCCGGCCACGGACGTGCCACTGCAGACAGCCATTTCCGCCT GCCGACGGTCGATACGTCGCGAGACGAGCTCGAACGCACCGATTTCTCCGCGTTCCAGCCGCTCGCCGATCTGCCGATGG CGATGACCGCACATGTTGTGTTTAGCGCCCTCGATCCCGCCCAACCCGCGACCACTTCTGCGACAATCATCGATCAGGTG ATTCGCGGACGAATCGGGTTCCAGGGACTGCTGATGAGCGACGACGTCTCGATGAATGCGCTGGAGGGCACGATTGCGGA GCGCGCGCGCGCGAGCATCGCGGCGGGCTGCGACATCGTCCTGCATTGTAACGGTAAGCTCGACGAAATGCGGCAGGTGG CCTCCGAGGCCCCGGAATTGACCGGGCTGGCGCTGCAACGCGCTACGGCGGCGCTGGCGTCGCGCAAGCCGCCGCAACCG CTCGATCGCCGCGCTGCGCGCGCCGAACTCGAAACCTTGATTCTCCGCGCAGGAACGAGCGCATGA
Upstream 100 bases:
>100_bases CTGCGGCAACCTGAAAAGTGCCGGCGGACAGTGCGTCGTCCAGAGGAATTAACGCCCGTTTCCTTGACCCTGGAGGCGCG CGCGGGCTAAGCGGCCTTGT
Downstream 100 bases:
>100_bases CCGCTGAAATTCTGCAGTTCGACACTGGGCGGCCCGCTGAGCAGGTCGACCAGGACGAGGCGCTCGTCATCGACGTCGAG GGCTATGAAGGCCCGCTCGA
Product: Beta-N-acetylhexosaminidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MSSRAFITGISGLGLTDDERGFIRESRPWGFILFKRNVDNPAQVSGLVQQLRTEVGQPDAPVLIDQEGGRVQRLGPPHWP VYPRGALFSALYDIDSQLGLAAARLSARLIASDLFDLGITVDCLPLADVPVSGADAVIGDRAYGFAAAKVAAIARAVTEG LEQGSVLPVLKHIPGHGRATADSHFRLPTVDTSRDELERTDFSAFQPLADLPMAMTAHVVFSALDPAQPATTSATIIDQV IRGRIGFQGLLMSDDVSMNALEGTIAERARASIAAGCDIVLHCNGKLDEMRQVASEAPELTGLALQRATAALASRKPPQP LDRRAARAELETLILRAGTSA
Sequences:
>Translated_341_residues MSSRAFITGISGLGLTDDERGFIRESRPWGFILFKRNVDNPAQVSGLVQQLRTEVGQPDAPVLIDQEGGRVQRLGPPHWP VYPRGALFSALYDIDSQLGLAAARLSARLIASDLFDLGITVDCLPLADVPVSGADAVIGDRAYGFAAAKVAAIARAVTEG LEQGSVLPVLKHIPGHGRATADSHFRLPTVDTSRDELERTDFSAFQPLADLPMAMTAHVVFSALDPAQPATTSATIIDQV IRGRIGFQGLLMSDDVSMNALEGTIAERARASIAAGCDIVLHCNGKLDEMRQVASEAPELTGLALQRATAALASRKPPQP LDRRAARAELETLILRAGTSA >Mature_340_residues SSRAFITGISGLGLTDDERGFIRESRPWGFILFKRNVDNPAQVSGLVQQLRTEVGQPDAPVLIDQEGGRVQRLGPPHWPV YPRGALFSALYDIDSQLGLAAARLSARLIASDLFDLGITVDCLPLADVPVSGADAVIGDRAYGFAAAKVAAIARAVTEGL EQGSVLPVLKHIPGHGRATADSHFRLPTVDTSRDELERTDFSAFQPLADLPMAMTAHVVFSALDPAQPATTSATIIDQVI RGRIGFQGLLMSDDVSMNALEGTIAERARASIAAGCDIVLHCNGKLDEMRQVASEAPELTGLALQRATAALASRKPPQPL DRRAARAELETLILRAGTSA
Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=282, Percent_Identity=36.1702127659575, Blast_Score=152, Evalue=3e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022956 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 36259; Mature: 36128
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSRAFITGISGLGLTDDERGFIRESRPWGFILFKRNVDNPAQVSGLVQQLRTEVGQPDA CCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC PVLIDQEGGRVQRLGPPHWPVYPRGALFSALYDIDSQLGLAAARLSARLIASDLFDLGIT CEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE VDCLPLADVPVSGADAVIGDRAYGFAAAKVAAIARAVTEGLEQGSVLPVLKHIPGHGRAT EEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCCCCCCC ADSHFRLPTVDTSRDELERTDFSAFQPLADLPMAMTAHVVFSALDPAQPATTSATIIDQV CCCCEECCCCCCCHHHHHHCCHHHHCHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH IRGRIGFQGLLMSDDVSMNALEGTIAERARASIAAGCDIVLHCNGKLDEMRQVASEAPEL HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCH TGLALQRATAALASRKPPQPLDRRAARAELETLILRAGTSA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SSRAFITGISGLGLTDDERGFIRESRPWGFILFKRNVDNPAQVSGLVQQLRTEVGQPDA CCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC PVLIDQEGGRVQRLGPPHWPVYPRGALFSALYDIDSQLGLAAARLSARLIASDLFDLGIT CEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE VDCLPLADVPVSGADAVIGDRAYGFAAAKVAAIARAVTEGLEQGSVLPVLKHIPGHGRAT EEEEECCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCCCCCCC ADSHFRLPTVDTSRDELERTDFSAFQPLADLPMAMTAHVVFSALDPAQPATTSATIIDQV CCCCEECCCCCCCHHHHHHCCHHHHCHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH IRGRIGFQGLLMSDDVSMNALEGTIAERARASIAAGCDIVLHCNGKLDEMRQVASEAPEL HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCH TGLALQRATAALASRKPPQPLDRRAARAELETLILRAGTSA HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA