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The map label for this gene is 86749846

Identifier: 86749846

GI number: 86749846

Start: 3113196

End: 3114059

Strand: Reverse

Name: 86749846

Synonym: RPB_2729

Alternate gene names: NA

Gene position: 3114059-3113196 (Counterclockwise)

Preceding gene: 86749847

Following gene: 86749842

Centisome position: 58.41

GC content: 72.22

Gene sequence:

>864_bases
ATGAGCGGCAACGCCGGCGACGACGCCGCCGCGGCATTCTGCGCCGAACTGGTGCGCAGCCACGATTTCGACCGCTACGC
CGCGACGCTGTTCGTCGAGCCGCCGCGCCGGCGCGCGCTGCTGGCGCTGTACGCCTTCAACGTCGAGGTGGTGCGCGTCC
GCGACCAGGTCAGCCAGCCGCTGCCGGGCGAAATCCGGCTGCAATGGTGGACCGACACGCTGGCCGGCACCGCGCATGGC
GGCATCGAAGGCAATCCGGTCGCGGCCGAATTGTTGCGCGCGACCGGGCAGCACGGGCTGCCGGTCGCGGCTCTGGCGCA
ACTGATCGAAACGCATCTGTTCGACCTCTACAACGACCCGATGCCGACGCTGACCGTGCTGGAAGCCTATGCGGCCGATA
CCGACGGCGCGCTGTTCGCGCTGGCGGCGCGGATCCTCGATCAGGGCTCGGAGGCGGTCGACCATCTCGCCCGCCATGCC
GGGGTGGCGCAGGGATTCGCGCGCGCGATCGCGCGGCTGCCGATCGATGCAGCGCGACGGCAGTGCTTCGTCCCGCTCGA
GCTTTTGGCGGCGCACGGCAGCAGCGAGGCCGAGGTCTATGCCGGCCGCGCCACACCGGCGCTACGGCTGACGCTCGACG
CGCTGATCGCCGAGGCGCAGCGCCATTGCGACGCCGCGCTGCGGCTGCTCGCCGAAGTGCCGCCACCGGCGCGCCGCGCG
TTCCTGCCGCTGGCGCTGGCGCAGCGCGATCTCGACCGGCTGGCGCAGCCCGGCACCGACCTGTTCGCGCCGCACGAGCG
CTCCCGTCTGGCGACGCTGTGGACCCTGTGGAAGGCGTCGCGGACGCGGGCGTTTCGGCAATAA

Upstream 100 bases:

>100_bases
GCATCGTTCTGGATACGATGCAGACCGGGCCGGCGGTGCGGACCTACAACATCATGATCGGCGAGCGCCGCCGCGTCGCC
GCGGCGCTGATCGCGGTGCC

Downstream 100 bases:

>100_bases
CGACACGCACGGACTCGTCATCCTGAGGCGCTCGCCGTCTTCGGCGAGCCTCGAAGGATGCGGCGACAGGCACCTGCGGC
TCATCCTTCGAGGCGGCCGC

Product: phytoene synthase

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Phytoene Synthase Protein; Phytoene Synthase Family Protein; Squalene Synthase HpnD; Squalene; Squalene And Phytoene Synthases Superfamily; Phytoene/Squalene Synthetase; Terpenoid Synthase; Geranylgeranyl-Diphosphate Geranylgeranyltransferase

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSGNAGDDAAAAFCAELVRSHDFDRYAATLFVEPPRRRALLALYAFNVEVVRVRDQVSQPLPGEIRLQWWTDTLAGTAHG
GIEGNPVAAELLRATGQHGLPVAALAQLIETHLFDLYNDPMPTLTVLEAYAADTDGALFALAARILDQGSEAVDHLARHA
GVAQGFARAIARLPIDAARRQCFVPLELLAAHGSSEAEVYAGRATPALRLTLDALIAEAQRHCDAALRLLAEVPPPARRA
FLPLALAQRDLDRLAQPGTDLFAPHERSRLATLWTLWKASRTRAFRQ

Sequences:

>Translated_287_residues
MSGNAGDDAAAAFCAELVRSHDFDRYAATLFVEPPRRRALLALYAFNVEVVRVRDQVSQPLPGEIRLQWWTDTLAGTAHG
GIEGNPVAAELLRATGQHGLPVAALAQLIETHLFDLYNDPMPTLTVLEAYAADTDGALFALAARILDQGSEAVDHLARHA
GVAQGFARAIARLPIDAARRQCFVPLELLAAHGSSEAEVYAGRATPALRLTLDALIAEAQRHCDAALRLLAEVPPPARRA
FLPLALAQRDLDRLAQPGTDLFAPHERSRLATLWTLWKASRTRAFRQ
>Mature_286_residues
SGNAGDDAAAAFCAELVRSHDFDRYAATLFVEPPRRRALLALYAFNVEVVRVRDQVSQPLPGEIRLQWWTDTLAGTAHGG
IEGNPVAAELLRATGQHGLPVAALAQLIETHLFDLYNDPMPTLTVLEAYAADTDGALFALAARILDQGSEAVDHLARHAG
VAQGFARAIARLPIDAARRQCFVPLELLAAHGSSEAEVYAGRATPALRLTLDALIAEAQRHCDAALRLLAEVPPPARRAF
LPLALAQRDLDRLAQPGTDLFAPHERSRLATLWTLWKASRTRAFRQ

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=252, Percent_Identity=28.968253968254, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI25150675, Length=291, Percent_Identity=26.4604810996564, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24641447, Length=258, Percent_Identity=28.6821705426357, Blast_Score=91, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 31184; Mature: 31053

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNAGDDAAAAFCAELVRSHDFDRYAATLFVEPPRRRALLALYAFNVEVVRVRDQVSQP
CCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHCCCEEEEHHHHCCC
LPGEIRLQWWTDTLAGTAHGGIEGNPVAAELLRATGQHGLPVAALAQLIETHLFDLYNDP
CCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
MPTLTVLEAYAADTDGALFALAARILDQGSEAVDHLARHAGVAQGFARAIARLPIDAARR
CCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QCFVPLELLAAHGSSEAEVYAGRATPALRLTLDALIAEAQRHCDAALRLLAEVPPPARRA
HHCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FLPLALAQRDLDRLAQPGTDLFAPHERSRLATLWTLWKASRTRAFRQ
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGNAGDDAAAAFCAELVRSHDFDRYAATLFVEPPRRRALLALYAFNVEVVRVRDQVSQP
CCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHCCCEEEEHHHHCCC
LPGEIRLQWWTDTLAGTAHGGIEGNPVAAELLRATGQHGLPVAALAQLIETHLFDLYNDP
CCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
MPTLTVLEAYAADTDGALFALAARILDQGSEAVDHLARHAGVAQGFARAIARLPIDAARR
CCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QCFVPLELLAAHGSSEAEVYAGRATPALRLTLDALIAEAQRHCDAALRLLAEVPPPARRA
HHCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
FLPLALAQRDLDRLAQPGTDLFAPHERSRLATLWTLWKASRTRAFRQ
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA