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The map label for this gene is yedQ [H]

Identifier: 86749790

GI number: 86749790

Start: 3054721

End: 3055956

Strand: Direct

Name: yedQ [H]

Synonym: RPB_2673

Alternate gene names: 86749790

Gene position: 3054721-3055956 (Clockwise)

Preceding gene: 86749789

Following gene: 86749791

Centisome position: 57.29

GC content: 66.59

Gene sequence:

>1236_bases
ATGTCGCTCGATTTTTCGACGTTGCTCTTGGTCGCGACGCTCATCTGCACGCTACTCGGGGGAATGCTCCTGTACTTCGG
CACCCAAGAGAAGATCCCTGCGCTCTACTGGTGGGGTGCCGCTTATCTGATCGGCGCGGCCACCGTCGCGCAGTGGCAGC
TGCTTGGATCGGTTCTGCCGGAACTGGTGGTGCTGTCGCTGGCCAGCGCGGGGTTCATCGCCTGCGGCATGATGTGGAAC
GCGGCGCGCGTGTTCCACGGCCGTAGACCGAACTGGCCGGGTCTCGTGCTCGGCGCGATCGCCTGGATCGCGGCGGTGAT
CTTGCTGCCGCCGGACTCGTCGTCGCTGCGCATGACCCTCGGGGCCGGCATCGTGGCAATCTATGCCGCTCTCACCGCGA
ACGAGCTGTTTTCCGAACGCCGCAAGGCTGTGATGCGGCGTTGGCCGGCGATGCTCGTCCCGCTGCTGCACGGCGGCGTT
CTGATGCTGCCGGTGGTGCTCGCCGAACTGCTGCCGGCCCGGAGCAACGCCTATACCAGCAATATCTGGGTGCTGATTTT
CGCGATCGAGCTGGTGCTGTATGCGATCGGCACCGTCTTCGTGGTCTTCATGCTGGTCTCGGAGCAGACCGTGAGCGCCC
ACAAGACGGCGGCGGCGCTCGATCCGCTCACCGGGTTGTTCAACCGGCGCGGCTTCTCGGAAGCCACCGCGCGGATGATC
GAGCGCGAAGCCGAGGCCGGGCGTCCGGTCACGGTGATGATCTTCGACCTCGATCACTTCAAATCGATCAACGACCGGTT
CGGTCATCCGGCGGGCGACGAGGTGATCAAACTGTTCGCCGCGATCGTGTCCGGGTCGCTGCGGATATCCGACCTGTGCG
GCCGGATCGGCGGCGAGGAATTCGCGGCCTTGCTGCCGTGCTCCATCGACGAAGCGATGACCGCGGCCGAGCGGGTGCGC
GAAGCCTTCGAGGGTTGCGGCCTGGAAGTCGACGGCGCGCCGATCGCGACCACCGTCAGCATCGGCGTTGCCGGTGGGCC
GGCGAATATCGAACTCGACGTTCTGCTCGCAGCGGCCGATACCGCGCTGTATCAGGCCAAGCGTGGCGGCCGCAACCGCG
TGGTCGCCACCGTCGAACAGCCGCTGTCGCTGGAGCAGGGCCGCCGCCGCGCCGCGCAGCGTCACGAGCCGGTCCAGCAG
GTGATCGTCCGCAATGCGATGCGCATCGGCGCCTGA

Upstream 100 bases:

>100_bases
TGTCAACGCGGTGCGGCCAGATTGCGATCAGCAGGGGGCACTTCTGCCGCATCAGCAGGTTGCCACCCTCGAGTTCGAAT
GGTCCTGGGTAGTTCGCATC

Downstream 100 bases:

>100_bases
CTGAGCGGCACGGTCGGCTTCAATTGCCGTGCGGAGTGCGATAAGACGCTTGCCCCAGCAAACCACACGGGTGCGCGCGC
ATGATCACCGAAATCGCACA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MSLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLPELVVLSLASAGFIACGMMWN
AARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTLGAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGV
LMLPVVLAELLPARSNAYTSNIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMI
EREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEEFAALLPCSIDEAMTAAERVR
EAFEGCGLEVDGAPIATTVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVATVEQPLSLEQGRRRAAQRHEPVQQ
VIVRNAMRIGA

Sequences:

>Translated_411_residues
MSLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLPELVVLSLASAGFIACGMMWN
AARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTLGAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGV
LMLPVVLAELLPARSNAYTSNIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMI
EREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEEFAALLPCSIDEAMTAAERVR
EAFEGCGLEVDGAPIATTVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVATVEQPLSLEQGRRRAAQRHEPVQQ
VIVRNAMRIGA
>Mature_410_residues
SLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLPELVVLSLASAGFIACGMMWNA
ARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTLGAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGVL
MLPVVLAELLPARSNAYTSNIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMIE
REAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEEFAALLPCSIDEAMTAAERVRE
AFEGCGLEVDGAPIATTVSIGVAGGPANIELDVLLAAADTALYQAKRGGRNRVVATVEQPLSLEQGRRRAAQRHEPVQQV
IVRNAMRIGA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=204, Percent_Identity=39.7058823529412, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082007, Length=202, Percent_Identity=37.6237623762376, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693134, Length=200, Percent_Identity=36.5, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081881, Length=200, Percent_Identity=36, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=37.6344086021505, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=36.1963190184049, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788381, Length=216, Percent_Identity=31.4814814814815, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788085, Length=207, Percent_Identity=30.9178743961353, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=33.7349397590361, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081974, Length=197, Percent_Identity=28.4263959390863, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787541, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=30.6666666666667, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 44161; Mature: 44030

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
ELVVLSLASAGFIACGMMWNAARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCEEEEH
GAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGVLMLPVVLAELLPARSNAYTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHH
NIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEE
HHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
FAALLPCSIDEAMTAAERVREAFEGCGLEVDGAPIATTVSIGVAGGPANIELDVLLAAAD
HHHHCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCEEEEEEEEHHH
TALYQAKRGGRNRVVATVEQPLSLEQGRRRAAQRHEPVQQVIVRNAMRIGA
HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLP
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
ELVVLSLASAGFIACGMMWNAARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEECCCCCCEEEEH
GAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGVLMLPVVLAELLPARSNAYTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHH
NIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEE
HHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
FAALLPCSIDEAMTAAERVREAFEGCGLEVDGAPIATTVSIGVAGGPANIELDVLLAAAD
HHHHCCCCHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCCEEEEEEEEHHH
TALYQAKRGGRNRVVATVEQPLSLEQGRRRAAQRHEPVQQVIVRNAMRIGA
HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA