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The map label for this gene is ydiU [C]

Identifier: 86749615

GI number: 86749615

Start: 2854802

End: 2856280

Strand: Reverse

Name: ydiU [C]

Synonym: RPB_2495

Alternate gene names: 86749615

Gene position: 2856280-2854802 (Counterclockwise)

Preceding gene: 86749619

Following gene: 86749614

Centisome position: 53.57

GC content: 65.92

Gene sequence:

>1479_bases
ATGACAGTCCATTTCCCGTTCGACAACAGCTATGCCGCACTGCCGGAAAACTTCTTCGCGCGGGTGGCTCCAACGCCGGT
CGCCGCCCCGCGGCTGATCAAGCTCAACCGCCCTCTGGCGCAGCGGCTCGGTCTCGATCCGGACAGGCTCGACAGTCCCG
AAGGCGCCGAGATCCTCGCCGGGACCCGCGTCCCGGAAGGCGCGGCCTCGATCGCGATGGCCTATGCCGGGCACCAGTTC
GGAAATTTCGTGCCCCAACTCGGCGATGGCCGCGCCATCCTGCTCGGTGAAGTGATCGACCGCGACGGCGTCCGCCGCGA
CATCCAGCTCAAAGGCTCCGGCCGGACGCCATTCTCGCGGATGGGCGATGGCCGCGCCGCACTCGGGCCGGTGCTCCGCG
AATACATCGTCAGCGAGGCGATGGCTGCACTCGGCGTCCCGACCACCCGCTCGCTGGCCGCGGTGCTGACGGGGGAGCGG
GTTCTGCGCGATCCGATCCAGCCGGGCGCCGTACTGACCCGGATTGCGTCGAGCCACATTCGGGTCGGCACCTTCCAGTT
CTTCGCCTCCCGCGGCGACCGCGACGCCGTCCGGGCGCTGGCCGACCACGTCATTGCCCGGCATTATCCGGAAGCGGCAG
AGGCGGATTCGCCCTACCTGGCGTTGCTGGAGGGCGTGATCGCCAGGCAGGCCGACCTGATCGCACGGTGGATGATGATC
GGCTTCATCCACGGCGTGATGAACACCGACAATACCTCGATCGCCGGCGAAACCATCGACTACGGCCCCTGCGCCTACAT
GGACACGTTCGACCCCAAGACGGTGTTTTCGTCGATCGACCATATGGGCCGCTACGCCTTCGGCAATCAGCCGCCGATCG
CACTTTGGAACCTGACCCGGCTCGCGGAGTGCCTGGTTCCCCTGCTGTCCGACGATGACGACAAGGGCGTGGAGATCGCC
CAGCGCGCGCTGGGCGGCTTCGCCGACCGCTTCAATGCCGCCTATCTGGCAGGACTGGCGGCCAAGCTCGGCTTGGCGAC
GACGCAACCGGAGGATACGCAGCTCGCGCAGGATTTTCTGGCCGCGATGGCGAAGGGCCGCGCCGACTTCACCCTCGCCT
TCCGCAGGCTGAGCGACGCCGCGATCGACCCGGTCGACCTCGGTGCGGTACGGGCGCTGTTCGACGATCCAACCGCCTTC
GACGAGTGGGCGCCACGTTGGCGAAGCCGGATTTCACTCGAAGAGCAAAATAATACCGCTCGACAAACCGAAATGCGGGA
GGTCAATCCGATCTATATCCCGCGCAATCACCGCGTCGAGGCGGTCATTCGAGCCGCGGTCGACCACGACGACTTCGCTC
CGTTTGAGGAAATCCTGGCGGTGCTCAGCAACCCCTTCCGGGAACAAGCGAAATTCGCCCGCTATGCGGAGCCGCCGCAG
CTCCATGAAAGGGTTCTCGAAACCTTCTGCGGAACTTGA

Upstream 100 bases:

>100_bases
CGCTGCTGGCAAACGCGTGCAGGAAGCTTGCAGAAGCTGTTGATCCGGGCCGCTTTCGGGCTGATTGTCAGAGTGGCAAA
CCGTTCCTATCTGGTGCCGG

Downstream 100 bases:

>100_bases
TCGCCGCACGGCGAGCGTGTCTAGTGGTCCGGAGTCGACGGCTTTCTGGGCAGACGGCGCTTTGCCGCTTGTTGCCTATG
CCACCATTTCCGGAACGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MTVHFPFDNSYAALPENFFARVAPTPVAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILAGTRVPEGAASIAMAYAGHQF
GNFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSRMGDGRAALGPVLREYIVSEAMAALGVPTTRSLAAVLTGER
VLRDPIQPGAVLTRIASSHIRVGTFQFFASRGDRDAVRALADHVIARHYPEAAEADSPYLALLEGVIARQADLIARWMMI
GFIHGVMNTDNTSIAGETIDYGPCAYMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTRLAECLVPLLSDDDDKGVEIA
QRALGGFADRFNAAYLAGLAAKLGLATTQPEDTQLAQDFLAAMAKGRADFTLAFRRLSDAAIDPVDLGAVRALFDDPTAF
DEWAPRWRSRISLEEQNNTARQTEMREVNPIYIPRNHRVEAVIRAAVDHDDFAPFEEILAVLSNPFREQAKFARYAEPPQ
LHERVLETFCGT

Sequences:

>Translated_492_residues
MTVHFPFDNSYAALPENFFARVAPTPVAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILAGTRVPEGAASIAMAYAGHQF
GNFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSRMGDGRAALGPVLREYIVSEAMAALGVPTTRSLAAVLTGER
VLRDPIQPGAVLTRIASSHIRVGTFQFFASRGDRDAVRALADHVIARHYPEAAEADSPYLALLEGVIARQADLIARWMMI
GFIHGVMNTDNTSIAGETIDYGPCAYMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTRLAECLVPLLSDDDDKGVEIA
QRALGGFADRFNAAYLAGLAAKLGLATTQPEDTQLAQDFLAAMAKGRADFTLAFRRLSDAAIDPVDLGAVRALFDDPTAF
DEWAPRWRSRISLEEQNNTARQTEMREVNPIYIPRNHRVEAVIRAAVDHDDFAPFEEILAVLSNPFREQAKFARYAEPPQ
LHERVLETFCGT
>Mature_491_residues
TVHFPFDNSYAALPENFFARVAPTPVAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILAGTRVPEGAASIAMAYAGHQFG
NFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSRMGDGRAALGPVLREYIVSEAMAALGVPTTRSLAAVLTGERV
LRDPIQPGAVLTRIASSHIRVGTFQFFASRGDRDAVRALADHVIARHYPEAAEADSPYLALLEGVIARQADLIARWMMIG
FIHGVMNTDNTSIAGETIDYGPCAYMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTRLAECLVPLLSDDDDKGVEIAQ
RALGGFADRFNAAYLAGLAAKLGLATTQPEDTQLAQDFLAAMAKGRADFTLAFRRLSDAAIDPVDLGAVRALFDDPTAFD
EWAPRWRSRISLEEQNNTARQTEMREVNPIYIPRNHRVEAVIRAAVDHDDFAPFEEILAVLSNPFREQAKFARYAEPPQL
HERVLETFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=397, Percent_Identity=40.0503778337531, Blast_Score=251, Evalue=2e-66,
Organism=Escherichia coli, GI1787999, Length=483, Percent_Identity=40.3726708074534, Blast_Score=340, Evalue=2e-94,
Organism=Saccharomyces cerevisiae, GI6325034, Length=340, Percent_Identity=35.2941176470588, Blast_Score=186, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2495_RHOP2 (Q2IX60)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_486111.1
- STRING:   Q2IX60
- GeneID:   3910284
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_2495
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   PRK00029
- BioCyc:   RPAL316058:RPB_2495-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53925; Mature: 53794

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVHFPFDNSYAALPENFFARVAPTPVAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILA
CEEECCCCCCCHHCCHHHHHHCCCCCCCCCHHEECCCHHHHHCCCCHHHCCCCCCCEEEE
GTRVPEGAASIAMAYAGHQFGNFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCEEEEEECCCCCCHHH
MGDGRAALGPVLREYIVSEAMAALGVPTTRSLAAVLTGERVLRDPIQPGAVLTRIASSHI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
RVGTFQFFASRGDRDAVRALADHVIARHYPEAAEADSPYLALLEGVIARQADLIARWMMI
CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIHGVMNTDNTSIAGETIDYGPCAYMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTR
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAECLVPLLSDDDDKGVEIAQRALGGFADRFNAAYLAGLAAKLGLATTQPEDTQLAQDFL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
AAMAKGRADFTLAFRRLSDAAIDPVDLGAVRALFDDPTAFDEWAPRWRSRISLEEQNNTA
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCHH
RQTEMREVNPIYIPRNHRVEAVIRAAVDHDDFAPFEEILAVLSNPFREQAKFARYAEPPQ
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHH
LHERVLETFCGT
HHHHHHHHHCCC
>Mature Secondary Structure 
TVHFPFDNSYAALPENFFARVAPTPVAAPRLIKLNRPLAQRLGLDPDRLDSPEGAEILA
EEECCCCCCCHHCCHHHHHHCCCCCCCCCHHEECCCHHHHHCCCCHHHCCCCCCCEEEE
GTRVPEGAASIAMAYAGHQFGNFVPQLGDGRAILLGEVIDRDGVRRDIQLKGSGRTPFSR
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCEEEEEECCCCCCHHH
MGDGRAALGPVLREYIVSEAMAALGVPTTRSLAAVLTGERVLRDPIQPGAVLTRIASSHI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
RVGTFQFFASRGDRDAVRALADHVIARHYPEAAEADSPYLALLEGVIARQADLIARWMMI
CHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GFIHGVMNTDNTSIAGETIDYGPCAYMDTFDPKTVFSSIDHMGRYAFGNQPPIALWNLTR
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LAECLVPLLSDDDDKGVEIAQRALGGFADRFNAAYLAGLAAKLGLATTQPEDTQLAQDFL
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
AAMAKGRADFTLAFRRLSDAAIDPVDLGAVRALFDDPTAFDEWAPRWRSRISLEEQNNTA
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCHH
RQTEMREVNPIYIPRNHRVEAVIRAAVDHDDFAPFEEILAVLSNPFREQAKFARYAEPPQ
HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCHH
LHERVLETFCGT
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA