| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is iorB [H]
Identifier: 86749401
GI number: 86749401
Start: 2629389
End: 2631557
Strand: Direct
Name: iorB [H]
Synonym: RPB_2281
Alternate gene names: 86749401
Gene position: 2629389-2631557 (Clockwise)
Preceding gene: 86749400
Following gene: 86749402
Centisome position: 49.32
GC content: 67.08
Gene sequence:
>2169_bases ATGACCATTCATGACACGAAGCTGTCGCGCCGTTCGCTGCTGAAGGCCGGCGCCGGCCTCGTCATCGGCGCCTATGTCGT TCGCGGCGGCAAGGCGTTTGCGCAGTCGCCCGCCCCGAGCGCCCCGAACATCGCGCCCAACACCTTTCTGATCATCGGCG CCGACGACACGGTCACCGTGCTGTGCAAGGGCATCGAGTTCGGGCAGGGCCCGTTCACCGGCATGGCGACGCTGGTCGCC GAGGAACTCGACGCCGACTGGTCGCAGATGCGGGCCGATCATGCGCCGTCGAACCCGGCGCTCTACAAGAACCTGGCGTT CGGTGTGCAGGGCACCGGCGGCTCGACGCAGATGGCGAATTCCTACATCCAGATGCGTCAGGTCGGCGCCGCCGCCCGCG AGATGCTGGTGGGCGCCGCCGCCGAGTCCTGGAAGGTGCCGGCCTCCGAGATCACCGTCGACAAGGGCGTGATCCGTCAT GCCTCCGGCAAGCAGGGCCGGTTCGGCGAATTCGCCGAGCAGGCGATGCTGCGCCCGGTGCCGAGCGCGCCGAAGCTGAA GGATCCGTCGCAGTTCAGGCTGATCGGCAAGGAAGGCGTGGTGAAGCGGCTCGACAGCGCCGCCAAATCCGACGGCAGCG CGCTGTTCACCATGGATATCCACGGGCCCGACATGCTGACCGTGCTGATCGCGCGGTCGCCGAAATTCGGCGGCGCGGTG AGGTCGTTCGATGCGACCAAGGCCAAGGCGGTCGCCGGTGTGGTCGATATCAAGCAGGTGCCGACCGGCGTGGCTGTCTA TGCCAAGGGGTTCTGGCCGGCCAAGACTGCGCGCGAGCTGCTGCAGATCGAGTGGGACAACAGCAAGGCCGAGACCCGCG GCACCACGGAAATCCTGACCGAGTTCCGCGCGCTGGCGAAGACGCCGGGCAAGGTGGTGACGCAGCACGGTGACGTCGAC GGCAGCTTCGCCAAAGGCGGGCAGGTGATCGAGGCGGAGTACGTGTTTCCGTATCTCGCCCACGCCGCGATGGAGCCGCT GAACGGTTATCTCAAATGGGACGGCGACACTGCCACCGCCAAATATGGCTGCCAGTTCCCGACGCCCGATCACGCCGCGA TCGCCCAGGTGCTCGGCCTCGGCATGGACAAGGTGAAGATCGACACGATCCTCGCCGGCGGCAGCTTCGGCCGCCGCGCG CAGCAGACGACGCATCAGGCCATCGAACTCGCCGAGGTCGCCAAGGCGATCGGACCCGGCAAGGCATTGAAGCTGGTGTG GACCCGCGAGGACGACATGCGGGGCGGCTATTATCGGCCGTTCGGCGTGCACCGGATGCGCGGCGTGGTGCGCGACGGCA GGATCGAGGGCTGGACCGACACCATCGTGGGCCAGTCCATCATGAAAGGCTCGCCGTTCGAAGCGATGACCTTCAAGGAC GGCATGGACGCCACCGCTTATGAGGGCTCCAACGAGCCGCCCTACGAGATCGCCAATTTCCGCTGCGACCTTCACCAGGT CGATCTCGGCGTGCCGGTGCTGTGGTGGCGGTCGGTCGGCCACACCCATACCGGCTATGCGGTCGAAGCCTTTGTCGACG AGTTGCTGACGGCGACCGGGCAGGATCCGGTCGAGGGCCGGCTGGCCTTGATGGGCAATCGCAAGCCGCGCCACGCCGGC GTGCTCAAAGCGGTCGCCGAATTGTCGAACTGGAAGGGCGCCAAGCCGGAGGCCGGCCGCGCTCGCGGCGTCGCGGTGGT GGAGAGCTTCAACACCTTCGTGGCGCAAGTGGTCGAACTGTCGATGAGCGCCGATGGGCCGGTGGTGCACAAAGTGTGGT GCGCGGTGGATTGCGGCGTCCCGGTCAACCCGGACATCATCCGCGCCCAGATGGAGGGCGGCATCGGCTTCGCGCTCGGC CACATCCTCTATGCGCAGCAGCCGATTGAAGCCGGCGCGCCGGTGTCCGGCAATTTCGACACCTATCGCTCGCTGCGGAT CAACGAGATGCCGCAGATCGAGGTGACGATCATTCCCTCGACCGAAAAGCCGACCGGTGTCGGCGAGCCGGGCGTGCCGC CGCTCGGCCCGGCCGTCGCCAACGCCATGGCGAAACTGGGTCTGCCCCGTCCGCGGAAATTGCCGATCGTGCCGGGAGCC AACGCATGA
Upstream 100 bases:
>100_bases ACATCGATCTGGCGATGACCGGCAACATCTGCCGCTGCGCCACCTACGTGCGGATCCGCGCCGCGATCCACCAGGCCGCC AAGTCGCTGGAGGGCTGAGC
Downstream 100 bases:
>100_bases GCCGGCTCCGTCATCTTGTACTGGCCGGTGCCGCCGGCATCCTGGCGGCGTGTGTGCTGACGATCGCCGGCCCCGTGCTG CAGGGCGAGGCCGACGCCGC
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 722; Mature: 721
Protein sequence:
>722_residues MTIHDTKLSRRSLLKAGAGLVIGAYVVRGGKAFAQSPAPSAPNIAPNTFLIIGADDTVTVLCKGIEFGQGPFTGMATLVA EELDADWSQMRADHAPSNPALYKNLAFGVQGTGGSTQMANSYIQMRQVGAAAREMLVGAAAESWKVPASEITVDKGVIRH ASGKQGRFGEFAEQAMLRPVPSAPKLKDPSQFRLIGKEGVVKRLDSAAKSDGSALFTMDIHGPDMLTVLIARSPKFGGAV RSFDATKAKAVAGVVDIKQVPTGVAVYAKGFWPAKTARELLQIEWDNSKAETRGTTEILTEFRALAKTPGKVVTQHGDVD GSFAKGGQVIEAEYVFPYLAHAAMEPLNGYLKWDGDTATAKYGCQFPTPDHAAIAQVLGLGMDKVKIDTILAGGSFGRRA QQTTHQAIELAEVAKAIGPGKALKLVWTREDDMRGGYYRPFGVHRMRGVVRDGRIEGWTDTIVGQSIMKGSPFEAMTFKD GMDATAYEGSNEPPYEIANFRCDLHQVDLGVPVLWWRSVGHTHTGYAVEAFVDELLTATGQDPVEGRLALMGNRKPRHAG VLKAVAELSNWKGAKPEAGRARGVAVVESFNTFVAQVVELSMSADGPVVHKVWCAVDCGVPVNPDIIRAQMEGGIGFALG HILYAQQPIEAGAPVSGNFDTYRSLRINEMPQIEVTIIPSTEKPTGVGEPGVPPLGPAVANAMAKLGLPRPRKLPIVPGA NA
Sequences:
>Translated_722_residues MTIHDTKLSRRSLLKAGAGLVIGAYVVRGGKAFAQSPAPSAPNIAPNTFLIIGADDTVTVLCKGIEFGQGPFTGMATLVA EELDADWSQMRADHAPSNPALYKNLAFGVQGTGGSTQMANSYIQMRQVGAAAREMLVGAAAESWKVPASEITVDKGVIRH ASGKQGRFGEFAEQAMLRPVPSAPKLKDPSQFRLIGKEGVVKRLDSAAKSDGSALFTMDIHGPDMLTVLIARSPKFGGAV RSFDATKAKAVAGVVDIKQVPTGVAVYAKGFWPAKTARELLQIEWDNSKAETRGTTEILTEFRALAKTPGKVVTQHGDVD GSFAKGGQVIEAEYVFPYLAHAAMEPLNGYLKWDGDTATAKYGCQFPTPDHAAIAQVLGLGMDKVKIDTILAGGSFGRRA QQTTHQAIELAEVAKAIGPGKALKLVWTREDDMRGGYYRPFGVHRMRGVVRDGRIEGWTDTIVGQSIMKGSPFEAMTFKD GMDATAYEGSNEPPYEIANFRCDLHQVDLGVPVLWWRSVGHTHTGYAVEAFVDELLTATGQDPVEGRLALMGNRKPRHAG VLKAVAELSNWKGAKPEAGRARGVAVVESFNTFVAQVVELSMSADGPVVHKVWCAVDCGVPVNPDIIRAQMEGGIGFALG HILYAQQPIEAGAPVSGNFDTYRSLRINEMPQIEVTIIPSTEKPTGVGEPGVPPLGPAVANAMAKLGLPRPRKLPIVPGA NA >Mature_721_residues TIHDTKLSRRSLLKAGAGLVIGAYVVRGGKAFAQSPAPSAPNIAPNTFLIIGADDTVTVLCKGIEFGQGPFTGMATLVAE ELDADWSQMRADHAPSNPALYKNLAFGVQGTGGSTQMANSYIQMRQVGAAAREMLVGAAAESWKVPASEITVDKGVIRHA SGKQGRFGEFAEQAMLRPVPSAPKLKDPSQFRLIGKEGVVKRLDSAAKSDGSALFTMDIHGPDMLTVLIARSPKFGGAVR SFDATKAKAVAGVVDIKQVPTGVAVYAKGFWPAKTARELLQIEWDNSKAETRGTTEILTEFRALAKTPGKVVTQHGDVDG SFAKGGQVIEAEYVFPYLAHAAMEPLNGYLKWDGDTATAKYGCQFPTPDHAAIAQVLGLGMDKVKIDTILAGGSFGRRAQ QTTHQAIELAEVAKAIGPGKALKLVWTREDDMRGGYYRPFGVHRMRGVVRDGRIEGWTDTIVGQSIMKGSPFEAMTFKDG MDATAYEGSNEPPYEIANFRCDLHQVDLGVPVLWWRSVGHTHTGYAVEAFVDELLTATGQDPVEGRLALMGNRKPRHAGV LKAVAELSNWKGAKPEAGRARGVAVVESFNTFVAQVVELSMSADGPVVHKVWCAVDCGVPVNPDIIRAQMEGGIGFALGH ILYAQQPIEAGAPVSGNFDTYRSLRINEMPQIEVTIIPSTEKPTGVGEPGVPPLGPAVANAMAKLGLPRPRKLPIVPGAN A
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 76965; Mature: 76834
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIHDTKLSRRSLLKAGAGLVIGAYVVRGGKAFAQSPAPSAPNIAPNTFLIIGADDTVTV CCCCCCHHHHHHHHHCCCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCEEEEEECCCCEEE LCKGIEFGQGPFTGMATLVAEELDADWSQMRADHAPSNPALYKNLAFGVQGTGGSTQMAN EEECCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHEEEEECCCCCCHHHHH SYIQMRQVGAAAREMLVGAAAESWKVPASEITVDKGVIRHASGKQGRFGEFAEQAMLRPV HHHHHHHHHHHHHHHHHHHCHHCCCCCHHHEEECHHHHCCCCCCCCCCHHHHHHHHHCCC PSAPKLKDPSQFRLIGKEGVVKRLDSAAKSDGSALFTMDIHGPDMLTVLIARSPKFGGAV CCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCH RSFDATKAKAVAGVVDIKQVPTGVAVYAKGFWPAKTARELLQIEWDNSKAETRGTTEILT HCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEEEECCCCCCCCCHHHHHH EFRALAKTPGKVVTQHGDVDGSFAKGGQVIEAEYVFPYLAHAAMEPLNGYLKWDGDTATA HHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCE KYGCQFPTPDHAAIAQVLGLGMDKVKIDTILAGGSFGRRAQQTTHQAIELAEVAKAIGPG EECCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC KALKLVWTREDDMRGGYYRPFGVHRMRGVVRDGRIEGWTDTIVGQSIMKGSPFEAMTFKD CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECC GMDATAYEGSNEPPYEIANFRCDLHQVDLGVPVLWWRSVGHTHTGYAVEAFVDELLTATG CCCCCCCCCCCCCCHHHHHEEECEEEECCCCCEEEHHCCCCCCCCHHHHHHHHHHHHHCC QDPVEGRLALMGNRKPRHAGVLKAVAELSNWKGAKPEAGRARGVAVVESFNTFVAQVVEL CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SMSADGPVVHKVWCAVDCGVPVNPDIIRAQMEGGIGFALGHILYAQQPIEAGAPVSGNFD HCCCCCCEEEEEEEEEECCCCCCHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCH TYRSLRINEMPQIEVTIIPSTEKPTGVGEPGVPPLGPAVANAMAKLGLPRPRKLPIVPGA HHHEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC NA CC >Mature Secondary Structure TIHDTKLSRRSLLKAGAGLVIGAYVVRGGKAFAQSPAPSAPNIAPNTFLIIGADDTVTV CCCCCHHHHHHHHHCCCCCEEEHHHHCCCHHHCCCCCCCCCCCCCCEEEEEECCCCEEE LCKGIEFGQGPFTGMATLVAEELDADWSQMRADHAPSNPALYKNLAFGVQGTGGSTQMAN EEECCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHEEEEECCCCCCHHHHH SYIQMRQVGAAAREMLVGAAAESWKVPASEITVDKGVIRHASGKQGRFGEFAEQAMLRPV HHHHHHHHHHHHHHHHHHHCHHCCCCCHHHEEECHHHHCCCCCCCCCCHHHHHHHHHCCC PSAPKLKDPSQFRLIGKEGVVKRLDSAAKSDGSALFTMDIHGPDMLTVLIARSPKFGGAV CCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCH RSFDATKAKAVAGVVDIKQVPTGVAVYAKGFWPAKTARELLQIEWDNSKAETRGTTEILT HCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHEEEEECCCCCCCCCHHHHHH EFRALAKTPGKVVTQHGDVDGSFAKGGQVIEAEYVFPYLAHAAMEPLNGYLKWDGDTATA HHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCE KYGCQFPTPDHAAIAQVLGLGMDKVKIDTILAGGSFGRRAQQTTHQAIELAEVAKAIGPG EECCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC KALKLVWTREDDMRGGYYRPFGVHRMRGVVRDGRIEGWTDTIVGQSIMKGSPFEAMTFKD CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECC GMDATAYEGSNEPPYEIANFRCDLHQVDLGVPVLWWRSVGHTHTGYAVEAFVDELLTATG CCCCCCCCCCCCCCHHHHHEEECEEEECCCCCEEEHHCCCCCCCCHHHHHHHHHHHHHCC QDPVEGRLALMGNRKPRHAGVLKAVAELSNWKGAKPEAGRARGVAVVESFNTFVAQVVEL CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH SMSADGPVVHKVWCAVDCGVPVNPDIIRAQMEGGIGFALGHILYAQQPIEAGAPVSGNFD HCCCCCCEEEEEEEEEECCCCCCHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCH TYRSLRINEMPQIEVTIIPSTEKPTGVGEPGVPPLGPAVANAMAKLGLPRPRKLPIVPGA HHHEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC NA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]