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The map label for this gene is yagI [H]

Identifier: 86749233

GI number: 86749233

Start: 2402310

End: 2403278

Strand: Direct

Name: yagI [H]

Synonym: RPB_2112

Alternate gene names: 86749233

Gene position: 2402310-2403278 (Clockwise)

Preceding gene: 86749228

Following gene: 86749235

Centisome position: 45.06

GC content: 69.25

Gene sequence:

>969_bases
ATGGGACGACGCTCGGAACGGCTCTGCAGACAGGCCAGCGGTGACCCCGCCGGCGAAAGCGATGTGATTCAGGTGGTGTC
GCGCGCCTTCGACGTGCTGCGCTGCTTCGAGGGGGCGGAGACCCGCCTCGGCAATCTCGAAATCTCCAACCGCTGCGGCT
TGCCGCGCTCGACGGTGTCGCGCCTGACCCACACGCTGACCCGGATGGGGCAGCTGGTGTATCTGCCGCGCGACCAGAAA
TATCGCATCGGCCCGAGCGCGGTGGCGATGGGCACGGCGATGATGCGCGGGCTGCAATTGCGCAATCTGGTCCGGACGCG
GCTGCAGGAAGTCGCCGAGCAGATCCCCGGCACGATCGGGTTCCTGATCCCCGACCGGTTTCATCTGGTGTACTTCGAAT
ACGCCCGCGCGCCGCATGCGCTCGGCCTGCATTCGACCACCGGCAGCCGCATCGCGATGGCGCAGACCGCCGGCGGCCAC
GCCTACACCGCGGCGCTCGACGAGGATGTCGCCAACGCGTTGCTGACGGAGATGAGCCGCGAGTTTCCGCAGCACGCGCC
GCTGCTGCGCGATCGTCTCGAGGCCAACCGCGCGATGCTGCGCGAACGCGGCTACGTGGTCTCCTGCGGCCTGTTCAGCC
CGCATATCAACGGCATCGCGGTGCCGATGTGGTCGCCGCAGTACCAGACCTATGTGGTGGTCAATATCGGCCTGCTGGCG
GCGATGTATGACGAGCAGCGTATCCACGACGAGGTCGCGCCGGTGCTGCTGCGGCTCAGCGCGGCGATCGATGCCCTGAT
CCAGAACGCCGATGGCGGCCTGATGACGGTCGGCACCGCCGGCAAGGCGACCAGCCGGCCGCGGCCTGCGAGCAGTCTGG
CCGCCGACGTCCGGCCCGACGTCCGGCCCGCCGGCCGGGCGCGCGAACTGGGCGCGGCGGAACCCCGACGGCAAGGTCAA
CCGGCATAG

Upstream 100 bases:

>100_bases
ATTCCGCAGAGTGAAATCAAAAAATGTGCATCGTGGCGGGGCTGATGGGCGCTTCCGTCATGGGGCATTCGGCATCAAGA
ACCACGCGGGAAAAACAAAA

Downstream 100 bases:

>100_bases
CCGGGCAGGCTTCGGGCGCCGCGGGCAAGGCTCGCGCGCGCCCGCGCGGCCTTGCGCTGCTCGCTCAGGCCGCCGCCGGC
CGCGGGTGCTTGCTGATCGT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MGRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISNRCGLPRSTVSRLTHTLTRMGQLVYLPRDQK
YRIGPSAVAMGTAMMRGLQLRNLVRTRLQEVAEQIPGTIGFLIPDRFHLVYFEYARAPHALGLHSTTGSRIAMAQTAGGH
AYTAALDEDVANALLTEMSREFPQHAPLLRDRLEANRAMLRERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLA
AMYDEQRIHDEVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPDVRPAGRARELGAAEPRRQGQ
PA

Sequences:

>Translated_322_residues
MGRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISNRCGLPRSTVSRLTHTLTRMGQLVYLPRDQK
YRIGPSAVAMGTAMMRGLQLRNLVRTRLQEVAEQIPGTIGFLIPDRFHLVYFEYARAPHALGLHSTTGSRIAMAQTAGGH
AYTAALDEDVANALLTEMSREFPQHAPLLRDRLEANRAMLRERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLA
AMYDEQRIHDEVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPDVRPAGRARELGAAEPRRQGQ
PA
>Mature_321_residues
GRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISNRCGLPRSTVSRLTHTLTRMGQLVYLPRDQKY
RIGPSAVAMGTAMMRGLQLRNLVRTRLQEVAEQIPGTIGFLIPDRFHLVYFEYARAPHALGLHSTTGSRIAMAQTAGGHA
YTAALDEDVANALLTEMSREFPQHAPLLRDRLEANRAMLRERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLAA
MYDEQRIHDEVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPDVRPAGRARELGAAEPRRQGQP
A

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=227, Percent_Identity=27.7533039647577, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 35191; Mature: 35060

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISNRCGLPRSTVS
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHH
RLTHTLTRMGQLVYLPRDQKYRIGPSAVAMGTAMMRGLQLRNLVRTRLQEVAEQIPGTIG
HHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLIPDRFHLVYFEYARAPHALGLHSTTGSRIAMAQTAGGHAYTAALDEDVANALLTEMSR
EECCCCEEEEEEEHHCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHH
EFPQHAPLLRDRLEANRAMLRERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLA
HCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEEHHHHH
AMYDEQRIHDEVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC
VRPAGRARELGAAEPRRQGQPA
CCCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISNRCGLPRSTVS
CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHH
RLTHTLTRMGQLVYLPRDQKYRIGPSAVAMGTAMMRGLQLRNLVRTRLQEVAEQIPGTIG
HHHHHHHHCCCEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLIPDRFHLVYFEYARAPHALGLHSTTGSRIAMAQTAGGHAYTAALDEDVANALLTEMSR
EECCCCEEEEEEEHHCCCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHH
EFPQHAPLLRDRLEANRAMLRERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLA
HCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEEHHHHH
AMYDEQRIHDEVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCC
VRPAGRARELGAAEPRRQGQPA
CCCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]