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The map label for this gene is ligD [H]

Identifier: 86748999

GI number: 86748999

Start: 2138794

End: 2141538

Strand: Direct

Name: ligD [H]

Synonym: RPB_1876

Alternate gene names: 86748999

Gene position: 2138794-2141538 (Clockwise)

Preceding gene: 86748997

Following gene: 86749001

Centisome position: 40.12

GC content: 66.63

Gene sequence:

>2745_bases
ATGGCGGCCAGCAAGACCCTCACCCTGTATCGCAACAAGCGCGACTTCGAACAGACCGCCGAGCCGCGCGGCGATGCCGA
GGTCGTGCCGTCGAAGCGGCGGCGCTTCGTAATTCAGAAGCACGACGCGACGCGGCTGCACTACGACCTGCGGCTCGAAT
ATGACGGCGTGTTCAAGTCCTGGGCGGTGACGCGCGGCCCATCGCTCGATCCACGCGACAAGCGGCTCGCGGTCGAGGTC
GAGGACCACCCGCTCGACTACGGCGACTTCGAAGGCACCATTCCCAAGGGCCAGTACGGCGGCGGCACGGTGCAACTCTG
GGACCGCGGCTATTGGGACTGCGATGATCCCGAGCGGGGGTTCAAGACCGGCGATCTGAAATTCACGCTCGACGGCGAGA
AGGTGCACGGCAGCTGGGTGCTGGTGCGGATGCGCCACGACCGCAACGGCGGCAAGCGGACCAACTGGCTGCTGATCAAG
CATCGCGACGACGACGCCCGCGAGGGCAAGGCCAACGACATTCTCGACGAGGATCGCTCGGTGGCGTCGGGCCGGACCAT
GAAGCAGATCGCCGAAGGCAAGGGGCGGGCGCCGAAGCCGTTCATGACAGGCAAGGTGGCGCGGGTGAAGGCCGACGCGG
TGTGGGACTCGAACAAGGGGCTGGCCGCGGACGCGCGCGCGGCCGACGACGCCGGAAAGGCGGCGAGACCCAAGCGCGCC
GCGGCGAAGAAGGCGCCGAAGAAGGCCGCAGCGAAGTCCCGCACAACGAAGACGACGTCGAGGGCCACGCGCAAGCCGGT
GAAGGTCGCCGCAATGCCGGACTTCATCCCGCCGCAGCTCTGCACTTCGGTCGAGCGTCCGCCCGGCAGCGACGGCTGGC
GCCACGAGATCAAGTTCGACGGCTATCGGATGCAGTTGCGCATCGCGCACGGCGAGGCTGCGCTCAGGACCCGCAAGGGG
CTCGACTGGACCGCGAAATTTCGGGCGATCGCCGACGAGGCTGCGGGCCTGCCGGATGCGATCATCGACACCGAGATCGT
CGCGCTCGATCATCACGGCCATCCCGACTTCGCGGCGTTGCAGGCGGCGCTGTCGGACGGCGACAGCGACAAGCTGATCT
GCTTTGCGTTCGATCTGCTCTATGCCGACGGTGAGGATCTACGGTCTTTGCCGCTGTCCGAGCGCAAGCAGCGCCTGCAA
GATCTGCTCAAAGCCGCGCGCGGACGTCGCAAGGAAGGCCTGATCCGCTATGTCGAGCACTTCGAGACCGGCGGCGATGC
CATCCTGCAATCGGCCTGCAAGCTGTCGCTCGAAGGCATCGTCTCCAAGAAGCTGGACGCGCCGTATCGCTCCGGCCGCA
GCGACAACTGGACCAAGGCGAAGTGCCGTGCCGGGCACGAGGTGGTGATCGGCGGCTGGAAAACGACGGCCGGCAAATTC
CGGTCGCTGATGGTCGGCGTGCAGAGCGACGATCGCGCGGGGAATCATCATTTGGCTTACGTCGGCCTGGTCGGCACCGG
ATTCGGCCAGGACGTGGTGAAGCGCATCCTGCCCGAGTTGAAGGCGCGCGCATCAAAGGACAATCCGTTCGCGGGCGAAA
ACGCGCCGCGCAAGACCAGCGACGTGAATTGGGTGACACCGGACCTGGTCGCCGAGATCGAATTCGCCGGCTTCACCGGC
GCCGGCATGGTGCGGCAGGCGGCGTTCAAGGGGCTGCGCGCCGACAAGCCGGCGGACGAAGTCGTGGCGGAGAAGCCTGC
CCAGGTCGGGATCGCGCGGCCGAAGCCGAAGCGCGGGACGAAAGCAGCCCCGGCTGTGCGGAAAGTCGCGTCCGCCGCCA
GCCGCGCCGAGGTGATGGGAATCTCGATCTCCAAGCCGGACAAGGTGCTGTGGCCGGCGAGCGAGATCAGCGAGGCGATC
ACCAAGCTCGACCTCGCACATTACTACGAAGCGGTCGGCGACTGGCTGATCGCGCACATCAAAGGGCGGCCGTGCTCGAT
CGTGCGGGCGCCCGACGGCATCGACGGCGAGCATTTCTTCCAGCGCCATGCGATGCCCGGGATGTCGAACCTGATCGACC
TCGCGAAGGTCTCCGGTGACCGCAAGCCCTATGTCCAGATCGATCGTGTCGAAGGGCTGATCGCGGTGGCGCAGATCGGC
GGCCTCGAACTGCATCCGTGGAACTGCGCGCCCGGCGCCTACGACGTACCAGGGCGGCTCGTGTTCGATCTCGATCCCGC
CCCGGATGTCGGCTTCGACGACGTGGTCGCCGCGGCACGCGAAATGAAAGACCGACTGGAGACGATCGGACTGTCGACGT
TCTGCAAGACCACCGGCGGTAAGGGACTGCACGTCGTGGTGCCGCTGCAGCCGAAGGACGACGTCGACTGGAAGCAGGCC
AAGATATTCGCGCAGACGGTGTGCGCGCAGATGGCCGACGACAGTCCTGAGCGTTATCTGCTCAACATGTCGAAGCAGCA
GCGCAAGGGAAAGATCTTCCTCGACTACCTGCGCAACGACCGGATGTCGACGGCGGTCGCGGCGCTGTCCCCCCGGGCGC
GCGAGGGAGCCACTGTATCGATGCCGGTGACCTGGAGTCAGGTCAAAGCGGGCCTCGATCCGAAGCGGTTCACGCTGGGT
ACGGTGCCGGCCCTGCTTCGCAAGACCAAGGCGTGGGCGGACTACGACGAATCAGCGGCCCCGCTGAGGGCGGCGCTCGA
GGCGCTCGCATCCAGCGGGGCTTGA

Upstream 100 bases:

>100_bases
ACCGGACGGCGGCGTCCGATCGGGAACTTCAACCCAGCGGTGGGGTTTTGGTTCCGGTGCTCGGCGACATGCGCACGAGC
GCTGCGAGGCGGAGACGACC

Downstream 100 bases:

>100_bases
AGGCGTCGCAGAGGGATCAGATCTTGCCGAGCAGGAGCAGGATCACCAGAATGATGATGATCAGGCCGAGGCCGCCGCCG
CCATAATAGCCGGTGCCGTA

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 914; Mature: 913

Protein sequence:

>914_residues
MAASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKSWAVTRGPSLDPRDKRLAVEV
EDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERGFKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIK
HRDDDAREGKANDILDEDRSVASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRA
AAKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFDGYRMQLRIAHGEAALRTRKG
LDWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAALQAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQ
DLLKAARGRRKEGLIRYVEHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKF
RSLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTSDVNWVTPDLVAEIEFAGFTG
AGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGTKAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAI
TKLDLAHYYEAVGDWLIAHIKGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIG
GLELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGGKGLHVVVPLQPKDDVDWKQA
KIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRNDRMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLG
TVPALLRKTKAWADYDESAAPLRAALEALASSGA

Sequences:

>Translated_914_residues
MAASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKSWAVTRGPSLDPRDKRLAVEV
EDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERGFKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIK
HRDDDAREGKANDILDEDRSVASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRA
AAKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFDGYRMQLRIAHGEAALRTRKG
LDWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAALQAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQ
DLLKAARGRRKEGLIRYVEHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKF
RSLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTSDVNWVTPDLVAEIEFAGFTG
AGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGTKAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAI
TKLDLAHYYEAVGDWLIAHIKGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIG
GLELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGGKGLHVVVPLQPKDDVDWKQA
KIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRNDRMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLG
TVPALLRKTKAWADYDESAAPLRAALEALASSGA
>Mature_913_residues
AASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKSWAVTRGPSLDPRDKRLAVEVE
DHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERGFKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIKH
RDDDAREGKANDILDEDRSVASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRAA
AKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFDGYRMQLRIAHGEAALRTRKGL
DWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAALQAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQD
LLKAARGRRKEGLIRYVEHFETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKFR
SLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTSDVNWVTPDLVAEIEFAGFTGA
GMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGTKAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAIT
KLDLAHYYEAVGDWLIAHIKGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIGG
LELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGGKGLHVVVPLQPKDDVDWKQAK
IFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRNDRMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLGT
VPALLRKTKAWADYDESAAPLRAALEALASSGA

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 100254; Mature: 100123

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKS
CCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCHHEEEEEECCCEEEEEEEEEEECCCHHH
WAVTRGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERG
HEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
FKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIKHRDDDAREGKANDILDEDRS
CCCCCEEEEECCCEECCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHCCCH
VASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRA
HHCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
AAKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFD
HHHHCCHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEEC
GYRMQLRIAHGEAALRTRKGLDWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAAL
CEEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCHHHH
QAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQDLLKAARGRRKEGLIRYVEH
HHHHCCCCCCCEEEEEEEEHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKF
HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCCCEEEEECCCCCHHHH
RSLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTS
HHHEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
DVNWVTPDLVAEIEFAGFTGAGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGT
CCCCCCHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
KAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAITKLDLAHYYEAVGDWLIAHI
CCHHHHHHHHHHHHHHEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
KGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIG
CCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEHHC
GLELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGG
CEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
KGLHVVVPLQPKDDVDWKQAKIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRND
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCEEEEHHHCC
RMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLGTVPALLRKTKAWADYDESAA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCH
PLRAALEALASSGA
HHHHHHHHHHHCCC
>Mature Secondary Structure 
AASKTLTLYRNKRDFEQTAEPRGDAEVVPSKRRRFVIQKHDATRLHYDLRLEYDGVFKS
CCCCEEEEEECCHHHHHHCCCCCCCCCCCCCHHEEEEEECCCEEEEEEEEEEECCCHHH
WAVTRGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWDCDDPERG
HEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
FKTGDLKFTLDGEKVHGSWVLVRMRHDRNGGKRTNWLLIKHRDDDAREGKANDILDEDRS
CCCCCEEEEECCCEECCCEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCHHCCCH
VASGRTMKQIAEGKGRAPKPFMTGKVARVKADAVWDSNKGLAADARAADDAGKAARPKRA
HHCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
AAKKAPKKAAAKSRTTKTTSRATRKPVKVAAMPDFIPPQLCTSVERPPGSDGWRHEIKFD
HHHHCCHHHHHHHHCCHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEEC
GYRMQLRIAHGEAALRTRKGLDWTAKFRAIADEAAGLPDAIIDTEIVALDHHGHPDFAAL
CEEEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHCCEEEEEECCCCCCHHHH
QAALSDGDSDKLICFAFDLLYADGEDLRSLPLSERKQRLQDLLKAARGRRKEGLIRYVEH
HHHHCCCCCCCEEEEEEEEHHCCCHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
FETGGDAILQSACKLSLEGIVSKKLDAPYRSGRSDNWTKAKCRAGHEVVIGGWKTTAGKF
HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCCCEEEEECCCCCHHHH
RSLMVGVQSDDRAGNHHLAYVGLVGTGFGQDVVKRILPELKARASKDNPFAGENAPRKTS
HHHEEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
DVNWVTPDLVAEIEFAGFTGAGMVRQAAFKGLRADKPADEVVAEKPAQVGIARPKPKRGT
CCCCCCHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
KAAPAVRKVASAASRAEVMGISISKPDKVLWPASEISEAITKLDLAHYYEAVGDWLIAHI
CCHHHHHHHHHHHHHHEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEE
KGRPCSIVRAPDGIDGEHFFQRHAMPGMSNLIDLAKVSGDRKPYVQIDRVEGLIAVAQIG
CCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCEEEEEHHC
GLELHPWNCAPGAYDVPGRLVFDLDPAPDVGFDDVVAAAREMKDRLETIGLSTFCKTTGG
CEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
KGLHVVVPLQPKDDVDWKQAKIFAQTVCAQMADDSPERYLLNMSKQQRKGKIFLDYLRND
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHCCCEEEEHHHCC
RMSTAVAALSPRAREGATVSMPVTWSQVKAGLDPKRFTLGTVPALLRKTKAWADYDESAA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCH
PLRAALEALASSGA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]