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The map label for this gene is exbD [H]

Identifier: 86748933

GI number: 86748933

Start: 2069866

End: 2070339

Strand: Direct

Name: exbD [H]

Synonym: RPB_1810

Alternate gene names: 86748933

Gene position: 2069866-2070339 (Clockwise)

Preceding gene: 86748932

Following gene: 86748934

Centisome position: 38.82

GC content: 66.03

Gene sequence:

>474_bases
ATGTCGATGAACCTAGCGGCAGGCGGCGGAGGCGGCGGCAGACGTCGCCGGGGCAAGCGCCCGGTGATGGCGGAGATCAA
CGTCACGCCGATGGTCGACGTGATGCTGGTGCTGCTGATCATCTTCATGGTCGCGGCGCCGCTGCTCACCACGTCGATCG
ACATCGACCTGCCGGTCGCGCGCGGCGGCGCGCAGATCCAGTCGAACACGCCGCCGCTGACGCTGTCGGTGAAGCGCACC
GGCGGCGGCTGCAATTCGCAGGTCGAACTCTATGTCGGCGACAGCCCGGTCGCGCCGGCGGAGATCGAGGCGAAGATCAA
GGCGATCCGGACGACGCGGTCGGAGACCGACAACGTGGTCTATCTTCGGGGCGACAAGGACGTCTGCTATACCGACATGA
TGAAGCTGCTGGGCCAGATCCGCACCGCGGGCTTCAAGGCGAATATCGTGATCGTGCCGGAGCAGGGCTCGTAA

Upstream 100 bases:

>100_bases
GCTGGAGGGTTTCGCGGACGAGTTCTCGGCCATCCTGTCGCGGCAGATCGACGAGCGCGCATGAGCCGGATGAAGGTGAG
CGCAAGGTGAGTCCCAGACC

Downstream 100 bases:

>100_bases
CCCGAGGATGAGGCGAGGCATCCGCCGCCGGTGAGGATGGAGCAGGTATCCTGAAGCTGAAGATCGACAAGACATTGGCG
GCGTCCGTGGCGTTGCACGT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSMNLAAGGGGGGRRRRGKRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGAQIQSNTPPLTLSVKRT
GGGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVVYLRGDKDVCYTDMMKLLGQIRTAGFKANIVIVPEQGS

Sequences:

>Translated_157_residues
MSMNLAAGGGGGGRRRRGKRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGAQIQSNTPPLTLSVKRT
GGGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVVYLRGDKDVCYTDMMKLLGQIRTAGFKANIVIVPEQGS
>Mature_156_residues
SMNLAAGGGGGGRRRRGKRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVARGGAQIQSNTPPLTLSVKRTG
GGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVVYLRGDKDVCYTDMMKLLGQIRTAGFKANIVIVPEQGS

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=145, Percent_Identity=34.4827586206897, Blast_Score=83, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16686; Mature: 16555

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMNLAAGGGGGGRRRRGKRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVA
CCCEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEC
RGGAQIQSNTPPLTLSVKRTGGGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVV
CCCCEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEE
YLRGDKDVCYTDMMKLLGQIRTAGFKANIVIVPEQGS
EEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
>Mature Secondary Structure 
SMNLAAGGGGGGRRRRGKRPVMAEINVTPMVDVMLVLLIIFMVAAPLLTTSIDIDLPVA
CCEECCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEC
RGGAQIQSNTPPLTLSVKRTGGGCNSQVELYVGDSPVAPAEIEAKIKAIRTTRSETDNVV
CCCCEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEE
YLRGDKDVCYTDMMKLLGQIRTAGFKANIVIVPEQGS
EEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]