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The map label for this gene is ureD

Identifier: 86748922

GI number: 86748922

Start: 2061089

End: 2061928

Strand: Direct

Name: ureD

Synonym: RPB_1799

Alternate gene names: 86748922

Gene position: 2061089-2061928 (Clockwise)

Preceding gene: 86748921

Following gene: 86748923

Centisome position: 38.66

GC content: 71.79

Gene sequence:

>840_bases
ATGATCCAGGCCGAAACCAGTGCGGCCGACTCCGCGGTGTTCGCCGGCAACCGCGCGCAGGGCGCGGTGCGGTTCGACGT
CCGCGCCGTCGACGGCGTCACGCGGCGCGGGCAGTTGCACGAATCCGGCTCGCTGCGCGTCCGCTTTCCGTCACCCGAGC
AGCAGGGCCTCTCGGCCGTGCTGGTCAATACCGCGGGCGGCATCGCCGGCGGTGATCGCTTCGGCGTCGACATCGCGGTC
GGCGAAAGCGCGCGGCTGACGTTGACCACCGCCGCCGCCGAGAAGATCTACCGCTCGCACGGCCCGGCGGCGCAGCTCGA
CATCGCGTTGCAGGTCGCCGAGGGCGGTCATCTGGCGTGGCTGCCGCAGGAAACCATCCTGTTCGACCAGGCCCGGGTCG
AGCGCCGCATCGACATCGATCTCGCCGCCGGCGCCTCGCTGCTGCTGTGCGAATCCGTGATCTTCGGCCGCTCGGCGATG
GGCGAGACGATGCGCAGCGGCCGTTTCACCGATCGCTGGCGGCTGCGGATCGGCGGCAAACTGGTGTTCGCCGAAACCGT
TCGGCTCGACGGCGACATCGGCGCATTGCTGGGCCGGCCGGCGGTGGCGAAGGGCGGCGTCGCCATCGGCACCGCGCTGA
TCGCGCCCGGCGATGCCGCGCTGGTCGCGCGGCTGCGCGAGGATGCGGACGGCTTCGGTGCAGAGGTCGGCATCACCGCC
TGGAATGGAATTGCAATGGCGCGGTTCTGCGCTCAAGATGCGGCCAAGCTGCGCGCCGACATGATGGCGGTGCTGCGCCG
CGCCGCCGGCCGCGCGCTGCCGCGGCTGTGGCTCGGTTAG

Upstream 100 bases:

>100_bases
GCCGAGAGTCAGCGACGCGCGTCGCCCCCACCCCAACCCTCCCCCGCAAGAGCGGGAAAGGGAGCGCGCTGCCGTTGGCG
CTATTCTGCGGCGACAACGC

Downstream 100 bases:

>100_bases
TTCGCTCCGCCCAACGACCTCTGCAATCGATCGAGTGCCTGCATGAATCTCTCCCCCCGCGAAAAGGACAAGCTGCTGGT
GTCGATGGCGGCGATGGTGG

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIQAETSAADSAVFAGNRAQGAVRFDVRAVDGVTRRGQLHESGSLRVRFPSPEQQGLSAVLVNTAGGIAGGDRFGVDIAV
GESARLTLTTAAAEKIYRSHGPAAQLDIALQVAEGGHLAWLPQETILFDQARVERRIDIDLAAGASLLLCESVIFGRSAM
GETMRSGRFTDRWRLRIGGKLVFAETVRLDGDIGALLGRPAVAKGGVAIGTALIAPGDAALVARLREDADGFGAEVGITA
WNGIAMARFCAQDAAKLRADMMAVLRRAAGRALPRLWLG

Sequences:

>Translated_279_residues
MIQAETSAADSAVFAGNRAQGAVRFDVRAVDGVTRRGQLHESGSLRVRFPSPEQQGLSAVLVNTAGGIAGGDRFGVDIAV
GESARLTLTTAAAEKIYRSHGPAAQLDIALQVAEGGHLAWLPQETILFDQARVERRIDIDLAAGASLLLCESVIFGRSAM
GETMRSGRFTDRWRLRIGGKLVFAETVRLDGDIGALLGRPAVAKGGVAIGTALIAPGDAALVARLREDADGFGAEVGITA
WNGIAMARFCAQDAAKLRADMMAVLRRAAGRALPRLWLG
>Mature_279_residues
MIQAETSAADSAVFAGNRAQGAVRFDVRAVDGVTRRGQLHESGSLRVRFPSPEQQGLSAVLVNTAGGIAGGDRFGVDIAV
GESARLTLTTAAAEKIYRSHGPAAQLDIALQVAEGGHLAWLPQETILFDQARVERRIDIDLAAGASLLLCESVIFGRSAM
GETMRSGRFTDRWRLRIGGKLVFAETVRLDGDIGALLGRPAVAKGGVAIGTALIAPGDAALVARLREDADGFGAEVGITA
WNGIAMARFCAQDAAKLRADMMAVLRRAAGRALPRLWLG

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_RHOP2 (Q2IZ53)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_485418.1
- STRING:   Q2IZ53
- GeneID:   3908880
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_1799
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   QETILFD
- ProtClustDB:   CLSK818584
- BioCyc:   RPAL316058:RPB_1799-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 29313; Mature: 29313

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQAETSAADSAVFAGNRAQGAVRFDVRAVDGVTRRGQLHESGSLRVRFPSPEQQGLSAV
CCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHCCEEE
LVNTAGGIAGGDRFGVDIAVGESARLTLTTAAAEKIYRSHGPAAQLDIALQVAEGGHLAW
EEECCCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCEEEEEEEEEECCCEEEE
LPQETILFDQARVERRIDIDLAAGASLLLCESVIFGRSAMGETMRSGRFTDRWRLRIGGK
CCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCE
LVFAETVRLDGDIGALLGRPAVAKGGVAIGTALIAPGDAALVARLREDADGFGAEVGITA
EEEEEEEEECCCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEE
WNGIAMARFCAQDAAKLRADMMAVLRRAAGRALPRLWLG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MIQAETSAADSAVFAGNRAQGAVRFDVRAVDGVTRRGQLHESGSLRVRFPSPEQQGLSAV
CCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHCCEEE
LVNTAGGIAGGDRFGVDIAVGESARLTLTTAAAEKIYRSHGPAAQLDIALQVAEGGHLAW
EEECCCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHCCCCEEEEEEEEEECCCEEEE
LPQETILFDQARVERRIDIDLAAGASLLLCESVIFGRSAMGETMRSGRFTDRWRLRIGGK
CCCHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCE
LVFAETVRLDGDIGALLGRPAVAKGGVAIGTALIAPGDAALVARLREDADGFGAEVGITA
EEEEEEEEECCCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEE
WNGIAMARFCAQDAAKLRADMMAVLRRAAGRALPRLWLG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA