Click here to switch to the map view.

The map label for this gene is 86748691

Identifier: 86748691

GI number: 86748691

Start: 1764668

End: 1766545

Strand: Reverse

Name: 86748691

Synonym: RPB_1566

Alternate gene names: NA

Gene position: 1766545-1764668 (Counterclockwise)

Preceding gene: 86748692

Following gene: 86748686

Centisome position: 33.13

GC content: 69.28

Gene sequence:

>1878_bases
ATGCTGAGACCAGACCCGCATTCCGCCGGCCGCAGCGCGCTCGACCTGTTCGCCTTCCTCGTCGTGCTGGGCGCGGCGAT
CGCCATCGCGGGGGCGATGTTCGCCGACTATTATCGCGCGCCGGATCTGCTGTGGCGCTATTTCTACCACGACCGCAATT
CGCACTACAGCTTCGGCCTCGACCTTGCGCTCGCGATGCGGCAGCTCGATCCCGCGTGGTTCTTCTCCGAGCTGGAAAAG
GCCAAGGTCTGGCCGCCGTTCCACGGGCTGGTGCTGAGCGTCGTGCTGCTGATCGGCGGCATCGATGTTCGCCTCGGCAT
CGTGCCGAGCCTGATCGGCTGGGTGGCGACGATCGCCTTCACATGGCTGATCGCGCGCCGGCTGTTCGCCGGCCGGATGG
AGGGCCTGTTCGCCGCGGCGGTCGCGAGCATCCTGACCATGGCCAGCCCGGCGTTCCGGCTGATCAGCGCCGACGTGATG
CTGGAAGGTCTCGGCGCCGGCCTCTCGGCCGCGGCGCTGTGGGCCTATCTGCGCGCGTCCGCTGAACCCGAGAAAGCCGC
GCGGTGGCGGCTGCTCGCCGTGCTGCTCACCGTGCTGTTCTTCCACAAGGGCAATTACTGGGGCCTGCTGCTGGCGCCGA
TCGCGATCGCCTTCGCGTCCGAACGCTGGCGCGCCACCCTGGCGGTCGCCCGCGCGATCGGCCGGATCAAGGTCGGCGCA
GCGATCGCAGCCCCCTTCCGGCAACCGCTGCTGATCCTCGCCGCGCTGGTGGCGGCGCTGGTCGGCTTCATCTACGCGCG
CGGCCCGACGGCGCTGGAGCTGTTCGGCAAATCCGTGTCGCTGTATCCGCCGGAGAACCTGACGACCCTCGCCTATGCGC
TGGTCTTCCTGTGGTGGGCGCTGTTCTGGTGGCGCCACAAGGCCGCGATCGACGCCGCGCTCGGCGTGCCCGGCCGCGCG
CTGCTGTACTGGCACGTCACGCCGATCGCGATCTCGTTCCTGCTGCCGCACCGGCTGTCGCGCTTCCTGTGGTTCGTCGG
GCCAGCCAACAGTCCGCAGCCCAGCACCGATCTGGCGCACAGTGCTCAGTTCTACTGGCACGTCTTCGCGGACGGCTTCC
ATACCCAACCCGGGCTGGCGATCCCCGCTGTGGGCTTCGCGGTGATCGGGGCGCTCGGCATCCGGCGTCTCGCGCCCGGC
GCGCGCGTGGTGTTTCTGTTCGCCCTGCTGGCGTGGATCGGGGTGCTGATCCATCCGCAATACCAGGGTCGCTTCCTGTC
GACCTGGCTGTTCGCGGTGTGGATCTGCACCGGTGCCGGCGCCGGACTGGCGCTCTTCTGGTTGCGGAGACGGCTGTCGC
CATGGGTGCGCGGCATCGTCGCCGTCGCCGCCACGGCGTCGCTGCTGGTCGTCAATGTCGGCCACGCCATTCCGGAGGTG
GCCTACGCCTCCGCGATCCACCCCCGTCCGGACAGCGGCCCGACCGATCTCGGTCTGGTCCGTCCCTATCTCGCGGAGCT
GGACGGCGCCCGCGAGGTGACGGTGTTGACCACCTTCGGCTCCAGCAAGCTGTTCGCCTGGGTGATCCGCGAGCACTGCC
GCTGCCACCGGCTCGTGCCCGATCCGTTCATCGCGGACCTCGCCTCGCGCGAGGACGTTCGCCGGGTGACGGCCGACAGG
ATCGCGCGATCGACCGCCGACATCATCGTGACCATCGATGCGCCGACCGGCCGCTACGAACTGCCTGCCGTCGGCTGGAC
CTATCCGAAAATGGCGGGCATCCTGGACGCCATGAACGATCAGACCCGCTACGCCCGTGGACCGAGCTACGACCTGCCGG
ACCAACAGGCGCAGGCGACGATCTGGCGGCGGCGCTGA

Upstream 100 bases:

>100_bases
ATGATCTCGATCTTCATCGGAATCGTGTTTTCGGGCCTGTTCACCGATCCGGCCGACAGCGGCAAACCTTGAACAGGGCG
GCGGCGCGAGGCGAACCGAG

Downstream 100 bases:

>100_bases
GGCGGCTGCGGGCGCGCTGCGGCTCAGCGTTGCGCGATAGCGAGCAAATAGCGGCCATAGCCGCTGTTCGCGATCGGCTT
CGCCAAAGCTTCGAGCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MLRPDPHSAGRSALDLFAFLVVLGAAIAIAGAMFADYYRAPDLLWRYFYHDRNSHYSFGLDLALAMRQLDPAWFFSELEK
AKVWPPFHGLVLSVVLLIGGIDVRLGIVPSLIGWVATIAFTWLIARRLFAGRMEGLFAAAVASILTMASPAFRLISADVM
LEGLGAGLSAAALWAYLRASAEPEKAARWRLLAVLLTVLFFHKGNYWGLLLAPIAIAFASERWRATLAVARAIGRIKVGA
AIAAPFRQPLLILAALVAALVGFIYARGPTALELFGKSVSLYPPENLTTLAYALVFLWWALFWWRHKAAIDAALGVPGRA
LLYWHVTPIAISFLLPHRLSRFLWFVGPANSPQPSTDLAHSAQFYWHVFADGFHTQPGLAIPAVGFAVIGALGIRRLAPG
ARVVFLFALLAWIGVLIHPQYQGRFLSTWLFAVWICTGAGAGLALFWLRRRLSPWVRGIVAVAATASLLVVNVGHAIPEV
AYASAIHPRPDSGPTDLGLVRPYLAELDGAREVTVLTTFGSSKLFAWVIREHCRCHRLVPDPFIADLASREDVRRVTADR
IARSTADIIVTIDAPTGRYELPAVGWTYPKMAGILDAMNDQTRYARGPSYDLPDQQAQATIWRRR

Sequences:

>Translated_625_residues
MLRPDPHSAGRSALDLFAFLVVLGAAIAIAGAMFADYYRAPDLLWRYFYHDRNSHYSFGLDLALAMRQLDPAWFFSELEK
AKVWPPFHGLVLSVVLLIGGIDVRLGIVPSLIGWVATIAFTWLIARRLFAGRMEGLFAAAVASILTMASPAFRLISADVM
LEGLGAGLSAAALWAYLRASAEPEKAARWRLLAVLLTVLFFHKGNYWGLLLAPIAIAFASERWRATLAVARAIGRIKVGA
AIAAPFRQPLLILAALVAALVGFIYARGPTALELFGKSVSLYPPENLTTLAYALVFLWWALFWWRHKAAIDAALGVPGRA
LLYWHVTPIAISFLLPHRLSRFLWFVGPANSPQPSTDLAHSAQFYWHVFADGFHTQPGLAIPAVGFAVIGALGIRRLAPG
ARVVFLFALLAWIGVLIHPQYQGRFLSTWLFAVWICTGAGAGLALFWLRRRLSPWVRGIVAVAATASLLVVNVGHAIPEV
AYASAIHPRPDSGPTDLGLVRPYLAELDGAREVTVLTTFGSSKLFAWVIREHCRCHRLVPDPFIADLASREDVRRVTADR
IARSTADIIVTIDAPTGRYELPAVGWTYPKMAGILDAMNDQTRYARGPSYDLPDQQAQATIWRRR
>Mature_625_residues
MLRPDPHSAGRSALDLFAFLVVLGAAIAIAGAMFADYYRAPDLLWRYFYHDRNSHYSFGLDLALAMRQLDPAWFFSELEK
AKVWPPFHGLVLSVVLLIGGIDVRLGIVPSLIGWVATIAFTWLIARRLFAGRMEGLFAAAVASILTMASPAFRLISADVM
LEGLGAGLSAAALWAYLRASAEPEKAARWRLLAVLLTVLFFHKGNYWGLLLAPIAIAFASERWRATLAVARAIGRIKVGA
AIAAPFRQPLLILAALVAALVGFIYARGPTALELFGKSVSLYPPENLTTLAYALVFLWWALFWWRHKAAIDAALGVPGRA
LLYWHVTPIAISFLLPHRLSRFLWFVGPANSPQPSTDLAHSAQFYWHVFADGFHTQPGLAIPAVGFAVIGALGIRRLAPG
ARVVFLFALLAWIGVLIHPQYQGRFLSTWLFAVWICTGAGAGLALFWLRRRLSPWVRGIVAVAATASLLVVNVGHAIPEV
AYASAIHPRPDSGPTDLGLVRPYLAELDGAREVTVLTTFGSSKLFAWVIREHCRCHRLVPDPFIADLASREDVRRVTADR
IARSTADIIVTIDAPTGRYELPAVGWTYPKMAGILDAMNDQTRYARGPSYDLPDQQAQATIWRRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68737; Mature: 68737

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPDPHSAGRSALDLFAFLVVLGAAIAIAGAMFADYYRAPDLLWRYFYHDRNSHYSFGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHH
DLALAMRQLDPAWFFSELEKAKVWPPFHGLVLSVVLLIGGIDVRLGIVPSLIGWVATIAF
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TWLIARRLFAGRMEGLFAAAVASILTMASPAFRLISADVMLEGLGAGLSAAALWAYLRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
AEPEKAARWRLLAVLLTVLFFHKGNYWGLLLAPIAIAFASERWRATLAVARAIGRIKVGA
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAPFRQPLLILAALVAALVGFIYARGPTALELFGKSVSLYPPENLTTLAYALVFLWWA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHHHH
LFWWRHKAAIDAALGVPGRALLYWHVTPIAISFLLPHRLSRFLWFVGPANSPQPSTDLAH
HHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHH
SAQFYWHVFADGFHTQPGLAIPAVGFAVIGALGIRRLAPGARVVFLFALLAWIGVLIHPQ
HHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
YQGRFLSTWLFAVWICTGAGAGLALFWLRRRLSPWVRGIVAVAATASLLVVNVGHAIPEV
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHH
AYASAIHPRPDSGPTDLGLVRPYLAELDGAREVTVLTTFGSSKLFAWVIREHCRCHRLVP
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
DPFIADLASREDVRRVTADRIARSTADIIVTIDAPTGRYELPAVGWTYPKMAGILDAMND
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCC
QTRYARGPSYDLPDQQAQATIWRRR
CHHHCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MLRPDPHSAGRSALDLFAFLVVLGAAIAIAGAMFADYYRAPDLLWRYFYHDRNSHYSFGL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHH
DLALAMRQLDPAWFFSELEKAKVWPPFHGLVLSVVLLIGGIDVRLGIVPSLIGWVATIAF
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
TWLIARRLFAGRMEGLFAAAVASILTMASPAFRLISADVMLEGLGAGLSAAALWAYLRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
AEPEKAARWRLLAVLLTVLFFHKGNYWGLLLAPIAIAFASERWRATLAVARAIGRIKVGA
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAPFRQPLLILAALVAALVGFIYARGPTALELFGKSVSLYPPENLTTLAYALVFLWWA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCHHHHHHHHHHHHHH
LFWWRHKAAIDAALGVPGRALLYWHVTPIAISFLLPHRLSRFLWFVGPANSPQPSTDLAH
HHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHH
SAQFYWHVFADGFHTQPGLAIPAVGFAVIGALGIRRLAPGARVVFLFALLAWIGVLIHPQ
HHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
YQGRFLSTWLFAVWICTGAGAGLALFWLRRRLSPWVRGIVAVAATASLLVVNVGHAIPEV
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHH
AYASAIHPRPDSGPTDLGLVRPYLAELDGAREVTVLTTFGSSKLFAWVIREHCRCHRLVP
HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC
DPFIADLASREDVRRVTADRIARSTADIIVTIDAPTGRYELPAVGWTYPKMAGILDAMND
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHCC
QTRYARGPSYDLPDQQAQATIWRRR
CHHHCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA