| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is livF [H]
Identifier: 86748680
GI number: 86748680
Start: 1752996
End: 1753835
Strand: Reverse
Name: livF [H]
Synonym: RPB_1555
Alternate gene names: 86748680
Gene position: 1753835-1752996 (Counterclockwise)
Preceding gene: 86748681
Following gene: 86748677
Centisome position: 32.89
GC content: 65.83
Gene sequence:
>840_bases GTGCAGACGAACACCGAAATTGCTAACCGCCCCGCCGCCGCCCCCGCAGTCGCCCCCCTCCTCAGCGTCAAGAACATCGA GGTGGTCTATGACGACGTCATCCTGGTGCTGCGCGGCCTCAGCCTCGACGTGCCGAAAGGCGCGATCGTGGCGCTGCTCG GCGCCAACGGCGCCGGCAAGTCGACGACGCTGAAGGCGATCTCCGGCCTGTTGAAGACCGAGGACGGCGAGGTCACCCGC GGCGAGATCCTGTTCGACGGCGAGCGGATCGACGGCACCGATCCGGACAAGATCGTGCGCCGCGGCATCTTTCAGGTGAT GGAGGGCCGCCGCATCGTCTCCGACATGACCTCGCTGGAAAACCTGCGGCTCGGCGCCTTCACCCGCAGCGACCGTAACG TCGCCGCCGACATCGACATGGTCTACGACTACTTCCCGCGGCTGAAGGAGCGTACCGGGCTCGCCGGTTATCTGAGCGGC GGCGAGCAGCAGATGCTGGCGATCGGCCGCGCGCTGATGGCGCGGCCGAAGATGATCCTGATGGACGAGCCGTCGATGGG CCTGTCGCCGCTGCTGGTGAAGGAAGTGTTCTCGATCATCAAGCAGATCAACCGCGACCTCGGCGTCACCATCCTGCTGG TGGAGCAGAACGCCCGCGCCGCGCTGTCGGTGGCCAGCCACGGCTACATCATGGAACAGGGCAAGGTCGTGCTCGACGGC ACCGCCGACGAGCTGCGCGACAACGAGGACGTCAAGGAGTTCTACCTCGGCGGCGCCGGCGACCAGAGGAAGAGCTTCAA GAATCTGAAGAGCTTCAAGCGACGCAAGCGCTGGCTCTAG
Upstream 100 bases:
>100_bases CACCCGGATCCCTCGCTACGCTCAGGCTCCGACCTCTCCCCGCAAGCGGGGAGAGGTTAGCAAGAGCCGCGTTCGCAAGA TTCAATTGGGAGCAAGGCTC
Downstream 100 bases:
>100_bases GGGATCGGCGACGACCGCTCGATGCAAAGAGATCCGGCACGCGACATCGGCGCGTTCGATCGGTCGGCCGCGCCGGCCGA TGCGGCCGTCGAGACAGGTT
Product: ABC transporter related
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MQTNTEIANRPAAAPAVAPLLSVKNIEVVYDDVILVLRGLSLDVPKGAIVALLGANGAGKSTTLKAISGLLKTEDGEVTR GEILFDGERIDGTDPDKIVRRGIFQVMEGRRIVSDMTSLENLRLGAFTRSDRNVAADIDMVYDYFPRLKERTGLAGYLSG GEQQMLAIGRALMARPKMILMDEPSMGLSPLLVKEVFSIIKQINRDLGVTILLVEQNARAALSVASHGYIMEQGKVVLDG TADELRDNEDVKEFYLGGAGDQRKSFKNLKSFKRRKRWL
Sequences:
>Translated_279_residues MQTNTEIANRPAAAPAVAPLLSVKNIEVVYDDVILVLRGLSLDVPKGAIVALLGANGAGKSTTLKAISGLLKTEDGEVTR GEILFDGERIDGTDPDKIVRRGIFQVMEGRRIVSDMTSLENLRLGAFTRSDRNVAADIDMVYDYFPRLKERTGLAGYLSG GEQQMLAIGRALMARPKMILMDEPSMGLSPLLVKEVFSIIKQINRDLGVTILLVEQNARAALSVASHGYIMEQGKVVLDG TADELRDNEDVKEFYLGGAGDQRKSFKNLKSFKRRKRWL >Mature_279_residues MQTNTEIANRPAAAPAVAPLLSVKNIEVVYDDVILVLRGLSLDVPKGAIVALLGANGAGKSTTLKAISGLLKTEDGEVTR GEILFDGERIDGTDPDKIVRRGIFQVMEGRRIVSDMTSLENLRLGAFTRSDRNVAADIDMVYDYFPRLKERTGLAGYLSG GEQQMLAIGRALMARPKMILMDEPSMGLSPLLVKEVFSIIKQINRDLGVTILLVEQNARAALSVASHGYIMEQGKVVLDG TADELRDNEDVKEFYLGGAGDQRKSFKNLKSFKRRKRWL
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=29.1304347826087, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=29.1304347826087, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI153792144, Length=208, Percent_Identity=29.3269230769231, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI27436953, Length=213, Percent_Identity=27.6995305164319, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI116734710, Length=233, Percent_Identity=28.755364806867, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27262624, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI27262626, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI27477115, Length=234, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI11967969, Length=230, Percent_Identity=26.5217391304348, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI9961252, Length=225, Percent_Identity=29.7777777777778, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=29.7777777777778, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI156105685, Length=228, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI9961250, Length=225, Percent_Identity=29.7777777777778, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI42490749, Length=262, Percent_Identity=26.7175572519084, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI42741659, Length=180, Percent_Identity=32.7777777777778, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI171184400, Length=237, Percent_Identity=27.4261603375527, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=26.3829787234043, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87082268, Length=240, Percent_Identity=46.6666666666667, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=29.4573643410853, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=33.469387755102, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788225, Length=222, Percent_Identity=34.2342342342342, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.5936073059361, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789586, Length=244, Percent_Identity=30.327868852459, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789672, Length=246, Percent_Identity=30.0813008130081, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787370, Length=253, Percent_Identity=28.8537549407115, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1790162, Length=235, Percent_Identity=26.8085106382979, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=31.1004784688995, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=30.1255230125523, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=30.6772908366534, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1787089, Length=210, Percent_Identity=30, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790544, Length=238, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786872, Length=236, Percent_Identity=29.6610169491525, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=30.8370044052863, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI48994943, Length=248, Percent_Identity=28.2258064516129, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786253, Length=251, Percent_Identity=27.4900398406374, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=30.6603773584906, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=257, Percent_Identity=26.0700389105058, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=31.5315315315315, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=27.1028037383178, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=30, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=28.169014084507, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082267, Length=233, Percent_Identity=28.3261802575107, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788210, Length=229, Percent_Identity=28.3842794759825, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=25.9414225941423, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789991, Length=241, Percent_Identity=28.2157676348548, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=30, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=28.2051282051282, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788644, Length=230, Percent_Identity=30, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788472, Length=213, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=29.8969072164948, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI145693107, Length=219, Percent_Identity=26.4840182648402, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786803, Length=228, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787112, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI87081782, Length=172, Percent_Identity=31.9767441860465, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=270, Percent_Identity=24.0740740740741, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=29.4392523364486, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789873, Length=189, Percent_Identity=30.1587301587302, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789962, Length=238, Percent_Identity=24.3697478991597, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787547, Length=268, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786981, Length=208, Percent_Identity=30.2884615384615, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=27.6018099547511, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787758, Length=218, Percent_Identity=21.5596330275229, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=25.4807692307692, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71984940, Length=216, Percent_Identity=33.7962962962963, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17510237, Length=209, Percent_Identity=26.3157894736842, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193209708, Length=217, Percent_Identity=31.7972350230415, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI71992285, Length=202, Percent_Identity=30.6930693069307, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71983516, Length=208, Percent_Identity=24.0384615384615, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71983523, Length=208, Percent_Identity=24.0384615384615, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71983510, Length=208, Percent_Identity=24.0384615384615, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193211017, Length=237, Percent_Identity=29.535864978903, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI193211015, Length=237, Percent_Identity=29.535864978903, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71996809, Length=237, Percent_Identity=29.535864978903, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17541710, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=236, Percent_Identity=26.6949152542373, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193202349, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17569143, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=30.2521008403361, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=31.2217194570136, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI212646699, Length=241, Percent_Identity=26.1410788381743, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533592, Length=227, Percent_Identity=25.9911894273128, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569145, Length=177, Percent_Identity=29.3785310734463, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322177, Length=188, Percent_Identity=28.1914893617021, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6322640, Length=247, Percent_Identity=25.5060728744939, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=191, Percent_Identity=29.3193717277487, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI21357907, Length=255, Percent_Identity=30.1960784313725, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=26.5116279069767, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24653245, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI85725262, Length=249, Percent_Identity=26.1044176706827, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI281363262, Length=222, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24641565, Length=220, Percent_Identity=28.6363636363636, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28571871, Length=198, Percent_Identity=30.8080808080808, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24659289, Length=231, Percent_Identity=32.4675324675325, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI28574533, Length=215, Percent_Identity=24.6511627906977, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24643674, Length=223, Percent_Identity=23.3183856502242, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24666092, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17647959, Length=215, Percent_Identity=25.5813953488372, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI28574744, Length=219, Percent_Identity=25.5707762557078, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136592, Length=214, Percent_Identity=25.2336448598131, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30623; Mature: 30623
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTNTEIANRPAAAPAVAPLLSVKNIEVVYDDVILVLRGLSLDVPKGAIVALLGANGAGK CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC STTLKAISGLLKTEDGEVTRGEILFDGERIDGTDPDKIVRRGIFQVMEGRRIVSDMTSLE HHHHHHHHHHHHCCCCCEEECEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH NLRLGAFTRSDRNVAADIDMVYDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMIL HCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCEEE MDEPSMGLSPLLVKEVFSIIKQINRDLGVTILLVEQNARAALSVASHGYIMEQGKVVLDG EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCEEEECCEEEEEC TADELRDNEDVKEFYLGGAGDQRKSFKNLKSFKRRKRWL CHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQTNTEIANRPAAAPAVAPLLSVKNIEVVYDDVILVLRGLSLDVPKGAIVALLGANGAGK CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC STTLKAISGLLKTEDGEVTRGEILFDGERIDGTDPDKIVRRGIFQVMEGRRIVSDMTSLE HHHHHHHHHHHHCCCCCEEECEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH NLRLGAFTRSDRNVAADIDMVYDYFPRLKERTGLAGYLSGGEQQMLAIGRALMARPKMIL HCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCEEE MDEPSMGLSPLLVKEVFSIIKQINRDLGVTILLVEQNARAALSVASHGYIMEQGKVVLDG EECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCEEEECCEEEEEC TADELRDNEDVKEFYLGGAGDQRKSFKNLKSFKRRKRWL CHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]