BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is ydaD [H]

Identifier: 86748630

GI number: 86748630

Start: 1700257

End: 1701117

Strand: Direct

Name: ydaD [H]

Synonym: RPB_1505

Alternate gene names: 86748630

Gene position: 1700257-1701117 (Clockwise)

Preceding gene: 86748628

Following gene: 86748631

Centisome position: 31.89

GC content: 63.65

Gene sequence:

>861_bases
ATGCCGTCGACCTATCCGAAGCCGCCCTATCCGAAGCAGCAGCAATCGATGCCGGGAACGACCGGCGAGATGAACCCGCG
CCCCGATCACGGCGAGACGACTTACAAGGGGGCCGGCCGGTTGGAGGGCATGAAAGCTCTCATCACCGGCGGCGACAGCG
GCATCGGTCGCGCCGTGGCGATTGCCTATGCGCGAGAGGGGGCCGACATCCTGATTTCGTATCTGAACGAAACGGAAGAC
GCAGCGGAGCTGAAAGCGCTGGTCGAGAAGGAGGGTCGCAAGGCCGTTCTGGTCGCCGGCGATCTGCAGGATCCGGCGCA
TTGCCGGTCGGTCGTGACGCGCGCGGTCGATGAACTCGGTGGTGTCGACATCCTGGTCAACAATGCGGCTCACCAGGCGA
CGTTCAAGGACATCGGCGACATCAGCGACGAGGAATGGGAGTTGACGTTCAAGGTCAACATCCACGCGATGTTCTATCTC
ACCAAGGCGGCGGTGCCGCACATGAAGCCCGGTAGCGCCATCGTCAATACGGCATCCATCAATTCGGATGCGCCGAACCC
CTCGCTTCTCGCCTATGCGACGACAAAAGGGGCGATCCAGAACTTCACGGCCGGGCTGGCGCAGCTGCTCGCCGAGAAAG
GCATCCGCGCGAATGCGGTCGCGCCCGGGCCGATCTGGACGCCGTTGATCCCCTCCACCATGCCGGAAGAGGTCGTCGAG
AATTTCGGCAAGAACGTGCCGATGAAGCGCGCCGGCCAACCGGCCGAACTGGCGACGGCCTATGTCATGCTCGCCGATCC
CCGCTCGAGCTACACATCCGGGACGACGGTCGCGGTGACGGGCGGGAAACCGTTCATCTGA

Upstream 100 bases:

>100_bases
GGCGCAGCCGCGGCCGCCGATCCGCCGTCGAGCGGTTTCGCCGGCGGATCGGAACGACACGCGCTCCGTTCGATTGATCC
CGACCCTGGAGGAGCCCGCC

Downstream 100 bases:

>100_bases
ACGCGCGTTGTCGCGTGCCGCCGCGGGCGAGAGATTTGTGACGAAAAGGAGACGAGGACGTGCAGCAGGCCATCAGCGGA
GAATTTTCGACGAGGCGCGG

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: GSP39 [H]

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MPSTYPKPPYPKQQQSMPGTTGEMNPRPDHGETTYKGAGRLEGMKALITGGDSGIGRAVAIAYAREGADILISYLNETED
AAELKALVEKEGRKAVLVAGDLQDPAHCRSVVTRAVDELGGVDILVNNAAHQATFKDIGDISDEEWELTFKVNIHAMFYL
TKAAVPHMKPGSAIVNTASINSDAPNPSLLAYATTKGAIQNFTAGLAQLLAEKGIRANAVAPGPIWTPLIPSTMPEEVVE
NFGKNVPMKRAGQPAELATAYVMLADPRSSYTSGTTVAVTGGKPFI

Sequences:

>Translated_286_residues
MPSTYPKPPYPKQQQSMPGTTGEMNPRPDHGETTYKGAGRLEGMKALITGGDSGIGRAVAIAYAREGADILISYLNETED
AAELKALVEKEGRKAVLVAGDLQDPAHCRSVVTRAVDELGGVDILVNNAAHQATFKDIGDISDEEWELTFKVNIHAMFYL
TKAAVPHMKPGSAIVNTASINSDAPNPSLLAYATTKGAIQNFTAGLAQLLAEKGIRANAVAPGPIWTPLIPSTMPEEVVE
NFGKNVPMKRAGQPAELATAYVMLADPRSSYTSGTTVAVTGGKPFI
>Mature_285_residues
PSTYPKPPYPKQQQSMPGTTGEMNPRPDHGETTYKGAGRLEGMKALITGGDSGIGRAVAIAYAREGADILISYLNETEDA
AELKALVEKEGRKAVLVAGDLQDPAHCRSVVTRAVDELGGVDILVNNAAHQATFKDIGDISDEEWELTFKVNIHAMFYLT
KAAVPHMKPGSAIVNTASINSDAPNPSLLAYATTKGAIQNFTAGLAQLLAEKGIRANAVAPGPIWTPLIPSTMPEEVVEN
FGKNVPMKRAGQPAELATAYVMLADPRSSYTSGTTVAVTGGKPFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=242, Percent_Identity=33.0578512396694, Blast_Score=118, Evalue=7e-27,
Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=28.8888888888889, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=30.0395256916996, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=29.8039215686275, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=28.1938325991189, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=29.3877551020408, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI31542939, Length=219, Percent_Identity=30.5936073059361, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=28.2258064516129, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.6451612903226, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI4504505, Length=208, Percent_Identity=28.3653846153846, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=32.2222222222222, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI10190704, Length=241, Percent_Identity=26.1410788381743, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.4526748971193, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI142976729, Length=213, Percent_Identity=32.8638497652582, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=27.843137254902, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI40254986, Length=202, Percent_Identity=30.6930693069307, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI210032110, Length=188, Percent_Identity=31.3829787234043, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=37.037037037037, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7706318, Length=212, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=29.2397660818713, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789378, Length=276, Percent_Identity=52.8985507246377, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=34.2412451361868, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.2857142857143, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.7692307692308, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=31.9502074688797, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.9838056680162, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=31.4285714285714, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=32, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.0813008130081, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=26.5625, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=27.4193548387097, Blast_Score=68, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=270, Percent_Identity=32.2222222222222, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=34.6774193548387, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=30.5882352941176, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.0827067669173, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=34.9794238683128, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=30.4511278195489, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=33.0827067669173, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=33.8461538461538, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=30.4511278195489, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=31.0606060606061, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=30.2238805970149, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.8804780876494, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.203007518797, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=240, Percent_Identity=28.3333333333333, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.6, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=30.3030303030303, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=30.2238805970149, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=28.8389513108614, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=29.3233082706767, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=29.3233082706767, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=239, Percent_Identity=31.7991631799163, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=27.8388278388278, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=206, Percent_Identity=29.6116504854369, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=30.3643724696356, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=28.3464566929134, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=246, Percent_Identity=30.4878048780488, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=28.0898876404494, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=266, Percent_Identity=27.0676691729323, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=31.4432989690722, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=213, Percent_Identity=27.6995305164319, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=29.7435897435897, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=242, Percent_Identity=25.6198347107438, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=253, Percent_Identity=26.0869565217391, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561272, Length=262, Percent_Identity=27.4809160305344, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=22.9571984435798, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=230, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI23397609, Length=243, Percent_Identity=32.5102880658436, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=32.0987654320988, Blast_Score=104, Evalue=5e-23,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=30.241935483871, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=29.4354838709677, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=27.3809523809524, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24644337, Length=204, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI17737361, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=29.3532338308458, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=31.0880829015544, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859837, Length=214, Percent_Identity=29.9065420560748, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574402, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24584744, Length=193, Percent_Identity=28.4974093264249, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30261; Mature: 30129

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTYPKPPYPKQQQSMPGTTGEMNPRPDHGETTYKGAGRLEGMKALITGGDSGIGRAVA
CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
IAYAREGADILISYLNETEDAAELKALVEKEGRKAVLVAGDLQDPAHCRSVVTRAVDELG
EEEHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
GVDILVNNAAHQATFKDIGDISDEEWELTFKVNIHAMFYLTKAAVPHMKPGSAIVNTASI
CEEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEHHHCCCCCCCCCCEEEEEEC
NSDAPNPSLLAYATTKGAIQNFTAGLAQLLAEKGIRANAVAPGPIWTPLIPSTMPEEVVE
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
NFGKNVPMKRAGQPAELATAYVMLADPRSSYTSGTTVAVTGGKPFI
HHCCCCCHHHCCCCHHHEEEEEEEECCCCCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
PSTYPKPPYPKQQQSMPGTTGEMNPRPDHGETTYKGAGRLEGMKALITGGDSGIGRAVA
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE
IAYAREGADILISYLNETEDAAELKALVEKEGRKAVLVAGDLQDPAHCRSVVTRAVDELG
EEEHHCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
GVDILVNNAAHQATFKDIGDISDEEWELTFKVNIHAMFYLTKAAVPHMKPGSAIVNTASI
CEEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEHHHCCCCCCCCCCEEEEEEC
NSDAPNPSLLAYATTKGAIQNFTAGLAQLLAEKGIRANAVAPGPIWTPLIPSTMPEEVVE
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
NFGKNVPMKRAGQPAELATAYVMLADPRSSYTSGTTVAVTGGKPFI
HHCCCCCHHHCCCCHHHEEEEEEEECCCCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]