| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is dps [C]
Identifier: 86748408
GI number: 86748408
Start: 1467655
End: 1468182
Strand: Direct
Name: dps [C]
Synonym: RPB_1283
Alternate gene names: 86748408
Gene position: 1467655-1468182 (Clockwise)
Preceding gene: 86748406
Following gene: 86748415
Centisome position: 27.53
GC content: 62.5
Gene sequence:
>528_bases GTGACCAAAGCCAAATCCGCTTCCATCGCTCCCGACCTCGACACCCCGACCGACCTGCCGCAGCAGTCCGTCGACAAGAT TTCCGCCGCGCTGAACACGTTGCTGGCCGATGCGTTCGCGCTGTATCTGAAGACCAAGAACTTCCACTGGCACATCAGCG GCCGGCATTTCCGCGATTATCATCTGATGCTGGACGAGCAGTCCGACCAGATCTTCGCCACCACCGACGCGCTGGCCGAG CGGGTCCGCAAGGTCGGCGGCGTCACCCTGCGCTCGATCGGCCACATCGCCAAGCTGCAGACCATCCAGGACAACAACGA GGACTACGTCCCGCCGCGCGAGATGCTGCGCGAGCTGATGAACGACAACAAGAAAATGGCGGCGGCGATGCGCAAGGCGC ACAAGATCGTCGACGAATGCGACGACGCCGCCAGCGCCGGCCTGCTCGAGAATTTCATCGACGAGACCGAAAAGCGCACC TGGTTCCTGTTCGAAGCCAGCCGCCAGGAAGGCGCCAACGAAGAGTGA
Upstream 100 bases:
>100_bases TTCGCGGTTGCGACCTGCTTGGATCGTCCGGATTGAACGATCGCCCCAGCCGACCGATCTTTCGCCTTCGGGCACATCCC TCTCGACAGGACAACCCGCC
Downstream 100 bases:
>100_bases GCATCATGAGGTGGTGAGTCCGCCCCGAGGCGCAGAGAACTCCCTCGCCCCGCTGTTGCGGGGAGAGGGATCGGAGGGCA TCGAAGAAATGTTCAGCCGC
Product: Ferritin and Dps
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MTKAKSASIAPDLDTPTDLPQQSVDKISAALNTLLADAFALYLKTKNFHWHISGRHFRDYHLMLDEQSDQIFATTDALAE RVRKVGGVTLRSIGHIAKLQTIQDNNEDYVPPREMLRELMNDNKKMAAAMRKAHKIVDECDDAASAGLLENFIDETEKRT WFLFEASRQEGANEE
Sequences:
>Translated_175_residues MTKAKSASIAPDLDTPTDLPQQSVDKISAALNTLLADAFALYLKTKNFHWHISGRHFRDYHLMLDEQSDQIFATTDALAE RVRKVGGVTLRSIGHIAKLQTIQDNNEDYVPPREMLRELMNDNKKMAAAMRKAHKIVDECDDAASAGLLENFIDETEKRT WFLFEASRQEGANEE >Mature_174_residues TKAKSASIAPDLDTPTDLPQQSVDKISAALNTLLADAFALYLKTKNFHWHISGRHFRDYHLMLDEQSDQIFATTDALAER VRKVGGVTLRSIGHIAKLQTIQDNNEDYVPPREMLRELMNDNKKMAAAMRKAHKIVDECDDAASAGLLENFIDETEKRTW FLFEASRQEGANEE
Specific function: Unspecifically Binds And Protects DNA From Oxidative Damage Mediated By Hydrogen Peroxide. Iron-Storage Protein. [C]
COG id: COG0783
COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dps family [H]
Homologues:
None
Paralogues:
None
Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002177 - InterPro: IPR023188 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 [H]
Pfam domain/function: PF00210 Ferritin [H]
EC number: NA
Molecular weight: Translated: 19807; Mature: 19675
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKAKSASIAPDLDTPTDLPQQSVDKISAALNTLLADAFALYLKTKNFHWHISGRHFRDY CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECEE HLMLDEQSDQIFATTDALAERVRKVGGVTLRSIGHIAKLQTIQDNNEDYVPPREMLRELM EEEEECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH NDNKKMAAAMRKAHKIVDECDDAASAGLLENFIDETEKRTWFLFEASRQEGANEE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC >Mature Secondary Structure TKAKSASIAPDLDTPTDLPQQSVDKISAALNTLLADAFALYLKTKNFHWHISGRHFRDY CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECEE HLMLDEQSDQIFATTDALAERVRKVGGVTLRSIGHIAKLQTIQDNNEDYVPPREMLRELM EEEEECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH NDNKKMAAAMRKAHKIVDECDDAASAGLLENFIDETEKRTWFLFEASRQEGANEE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]