BacMap

Definition	Rhodopseudomonas palustris HaA2, complete genome.
Accession	NC_007778
Length	5,331,656

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The map label for this gene is fixR [H]

Identifier: 86748329

GI number: 86748329

Start: 1378147

End: 1378923

Strand: Reverse

Name: fixR [H]

Synonym: RPB_1204

Alternate gene names: 86748329

Gene position: 1378923-1378147 (Counterclockwise)

Preceding gene: 86748330

Following gene: 86748324

Centisome position: 25.86

GC content: 66.92

Gene sequence:

>777_bases
ATGAGCCCCGACACCCCGAAGCCACGCGCGCAGGATAGCAATGCGCAGCGCCGGACCATGATTCTGACCGGCGCGAGCCG
TGGAATCGGCCATGCCACCGTGATCCGCTTCTCCAGCGCCGGGTGGCGGGTGATCACCTGTTCGCGCCATCCGTTCCCGG
AGGAATGCCCGTGGGGCGCCGGCCCCGAGGATCACATCCAGATCAATCTGGGCGACCGCGCCGACACGCTGCGCGGAATC
GACGAGATCCGTGAGCGGCTCGACGGCGATCAGCTCCACGCGCTGGTCAACAACGCCGCGATCTCACCGAAGGCAGCCGG
CGGCGGCCGGCTCGGCTCGATCGACACCGAAATGGACACCTGGGAGCACGTCTTCCACGTCAACTTCTTCGCGCCGATCA
TGATGGCGCGGGGGCTGATCGAGGAACTCAAGGCCGCGAAGGGCTCGGTCGTCAACGTCACCTCGATCGCGGGCTCGCGG
GTGCATCCGTTCGCCGGCGCCGCCTACGCGACGTCGAAGGCCGCTCTCGCCGCGCTGACGCGCGAAATGGCGTCGGATTT
CGGCCGCATCGGGGTGCGGGTGAATTCGATCGCCCCGGGTGAGATCGACACCTCGATCCTGTCGCCCGGCACCGAGAAGA
TCGTCGAGGAAGACATCCCGATGCGCCGCCTCGGCACGCCGGACGAAGTGGCCAAGATCATCTACGTGCTGTGCACGGAG
ACGTCGTCCTATGTGAACGGCGCCGAGATCCACATCAACGGCGGCCAGCACGTGTAG

Upstream 100 bases:

>100_bases
GGGTCGAATTCTGGCACGATCGCCCGTTCCGGCTGCACGACCGCATCGAATTCAACCGGGACACCCCGGCCCAACCCTGG
ACCAAGACAAGGCTGTATCC

Downstream 100 bases:

>100_bases
CGACGTCGACTCTGTCCTGATAGTGGCGGCGGGGCGAGCGATCGCCCCGCCGTTTTTGTCGATGGTCAGTCGGCGCGAAA
GCGGCGCGGCGATCGCGCGC

Product: Short-chain dehydrogenase/reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSPDTPKPRAQDSNAQRRTMILTGASRGIGHATVIRFSSAGWRVITCSRHPFPEECPWGAGPEDHIQINLGDRADTLRGI
DEIRERLDGDQLHALVNNAAISPKAAGGGRLGSIDTEMDTWEHVFHVNFFAPIMMARGLIEELKAAKGSVVNVTSIAGSR
VHPFAGAAYATSKAALAALTREMASDFGRIGVRVNSIAPGEIDTSILSPGTEKIVEEDIPMRRLGTPDEVAKIIYVLCTE
TSSYVNGAEIHINGGQHV

Sequences:

>Translated_258_residues
MSPDTPKPRAQDSNAQRRTMILTGASRGIGHATVIRFSSAGWRVITCSRHPFPEECPWGAGPEDHIQINLGDRADTLRGI
DEIRERLDGDQLHALVNNAAISPKAAGGGRLGSIDTEMDTWEHVFHVNFFAPIMMARGLIEELKAAKGSVVNVTSIAGSR
VHPFAGAAYATSKAALAALTREMASDFGRIGVRVNSIAPGEIDTSILSPGTEKIVEEDIPMRRLGTPDEVAKIIYVLCTE
TSSYVNGAEIHINGGQHV
>Mature_257_residues
SPDTPKPRAQDSNAQRRTMILTGASRGIGHATVIRFSSAGWRVITCSRHPFPEECPWGAGPEDHIQINLGDRADTLRGID
EIRERLDGDQLHALVNNAAISPKAAGGGRLGSIDTEMDTWEHVFHVNFFAPIMMARGLIEELKAAKGSVVNVTSIAGSRV
HPFAGAAYATSKAALAALTREMASDFGRIGVRVNSIAPGEIDTSILSPGTEKIVEEDIPMRRLGTPDEVAKIIYVLCTET
SSYVNGAEIHINGGQHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=264, Percent_Identity=31.0606060606061, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=29.5719844357977, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=29.4117647058824, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI66933014, Length=152, Percent_Identity=29.6052631578947, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40254992, Length=235, Percent_Identity=26.3829787234043, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI126723750, Length=174, Percent_Identity=29.3103448275862, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI19923817, Length=268, Percent_Identity=26.865671641791, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI119392083, Length=203, Percent_Identity=29.064039408867, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI4503301, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI59889578, Length=236, Percent_Identity=24.1525423728814, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1788459, Length=197, Percent_Identity=29.4416243654822, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=28.6821705426357, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787335, Length=251, Percent_Identity=24.3027888446215, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=31.2, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=31.3008130081301, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=26.171875, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=28.4584980237154, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=29.3436293436293, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=26.0536398467433, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=25, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=31.0756972111554, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=31.6602316602317, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=28.0487804878049, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=32.319391634981, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=32.046332046332, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=31.0344827586207, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=33.587786259542, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=29.811320754717, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=31.2741312741313, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=257, Percent_Identity=29.5719844357977, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=30, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=29.3893129770992, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=31.4176245210728, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=258, Percent_Identity=30.6201550387597, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=27.710843373494, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=28.3524904214559, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.0380228136882, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=29.0697674418605, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=247, Percent_Identity=25.9109311740891, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=26.0700389105058, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=209, Percent_Identity=29.1866028708134, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=28.4090909090909, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=29.0909090909091, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=269, Percent_Identity=24.907063197026, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=142, Percent_Identity=29.5774647887324, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=201, Percent_Identity=28.8557213930348, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=28.4974093264249, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=30.4, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=29.3172690763052, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644337, Length=183, Percent_Identity=37.1584699453552, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=34.2741935483871, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=29.2307692307692, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=29.296875, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571526, Length=262, Percent_Identity=27.4809160305344, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27703; Mature: 27571

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPDTPKPRAQDSNAQRRTMILTGASRGIGHATVIRFSSAGWRVITCSRHPFPEECPWGA
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCC
GPEDHIQINLGDRADTLRGIDEIRERLDGDQLHALVNNAAISPKAAGGGRLGSIDTEMDT
CCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
WEHVFHVNFFAPIMMARGLIEELKAAKGSVVNVTSIAGSRVHPFAGAAYATSKAALAALT
HHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
REMASDFGRIGVRVNSIAPGEIDTSILSPGTEKIVEEDIPMRRLGTPDEVAKIIYVLCTE
HHHHHHHHHCCEEEECCCCCCCCHHHCCCCHHHHHHHCCCHHHCCCHHHHHHHHHHEECC
TSSYVNGAEIHINGGQHV
CCCCCCCEEEEECCCCCC
>Mature Secondary Structure 
SPDTPKPRAQDSNAQRRTMILTGASRGIGHATVIRFSSAGWRVITCSRHPFPEECPWGA
CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCC
GPEDHIQINLGDRADTLRGIDEIRERLDGDQLHALVNNAAISPKAAGGGRLGSIDTEMDT
CCCCEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
WEHVFHVNFFAPIMMARGLIEELKAAKGSVVNVTSIAGSRVHPFAGAAYATSKAALAALT
HHHHEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
REMASDFGRIGVRVNSIAPGEIDTSILSPGTEKIVEEDIPMRRLGTPDEVAKIIYVLCTE
HHHHHHHHHCCEEEECCCCCCCCHHHCCCCHHHHHHHCCCHHHCCCHHHHHHHHHHEECC
TSSYVNGAEIHINGGQHV
CCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3313281; 11157954; 12597275 [H]