| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is 86748316
Identifier: 86748316
GI number: 86748316
Start: 1367463
End: 1368401
Strand: Reverse
Name: 86748316
Synonym: RPB_1191
Alternate gene names: NA
Gene position: 1368401-1367463 (Counterclockwise)
Preceding gene: 86748317
Following gene: 86748315
Centisome position: 25.67
GC content: 68.69
Gene sequence:
>939_bases ATGGCGCAGGCGCCCGAGCAGCCGAACAAGGAGACGCTGGCGGTTCGACGTGCTGATGGCGAGAGCCGGACGCTCGCCGC ATCGCTGCCGCGCCTGATGCTCGAAGCCCGCCGCATCGCCAACAACGTCACCCACGGCCTGCACGGCCGCCGCCGCGCCG GCGCCGGCGAAAACTTCTGGCAATATCGCCGCTTCGTCTCCGGCGAACCGGCCACCCGCGTCGACTGGCGCCGTTCGGCG CGCGACGATCATCTCTACGTCCGCGAGCTGGAATGGGAGGCCGCGCACACCGTGTGGCTGTGGCCGGACCGTTCCGCCTC GATGGCCTACGCCTCGAAGGGCGTGCGCGACAGCAAGCTCGAGCGCGCCCTGATCGTGACTTTCGCGCTGGCCGAATTGC TGGTCGCGGGCGGCGAACGCGTCGGCATTCCCGGGCTGATGAACCCGACCTCGAACAACAATGTGATCGACCGGATGGCG CAGGCGATCCTGCACGACACAACCTCGCGTGACAGCCTGCCGCCGTCCTTCGTGCCGTCGTCGCTGGCCGAGATCGTGGT GCTGTCCGACTTCTGGTCACCGCTCGGCGAGATCCGGCAGATGCTTTCGGGCCTGTCCTCGTCCGGCGCGCACGGCTCGC TGGTGCAGGTCGTCGATCCTGCGGAAGAGAGCTTTCCGTTCTCCGGACGCATCGAATTCGTCGAGCCGGAAGGCGGCGGT GCGATCACCGCGGGCCGCGCCGAGACCTGGGCGGCGGACTACGTCGCGCTGGTCGCGGCGCATCGCGATCAGATCCGAGT CGAGACCGGCACGCTCGACTGGCTGTTTTCGACGCACACCACCAGCCGTTCGGCTGCCGAGCTGTTGTTGTTCCTGCACG CCGGGATGACCACGGCCAAGGGCGCCGAGCGCGGCACCAAAACGGGACTCGGCGCATGA
Upstream 100 bases:
>100_bases AGCCCGTGCTGAAACACCGCATGGCGCTGACCTTCTCGGCGCGCGCCGAAGGTCGCACGATCCCGGACGTGATCCGGCAG CTCAAGAGCCGGATCGGCTG
Downstream 100 bases:
>100_bases TCGGCGGTTTGCCCCTGTCCTTCGCCCAACCGCTGCTGCTGCTCGGCCTGCTCGCGCTGCCGGCGCTGTGGTGGCTGCTG CGGGTGACGCCGCCGCGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MAQAPEQPNKETLAVRRADGESRTLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPATRVDWRRSA RDDHLYVRELEWEAAHTVWLWPDRSASMAYASKGVRDSKLERALIVTFALAELLVAGGERVGIPGLMNPTSNNNVIDRMA QAILHDTTSRDSLPPSFVPSSLAEIVVLSDFWSPLGEIRQMLSGLSSSGAHGSLVQVVDPAEESFPFSGRIEFVEPEGGG AITAGRAETWAADYVALVAAHRDQIRVETGTLDWLFSTHTTSRSAAELLLFLHAGMTTAKGAERGTKTGLGA
Sequences:
>Translated_312_residues MAQAPEQPNKETLAVRRADGESRTLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPATRVDWRRSA RDDHLYVRELEWEAAHTVWLWPDRSASMAYASKGVRDSKLERALIVTFALAELLVAGGERVGIPGLMNPTSNNNVIDRMA QAILHDTTSRDSLPPSFVPSSLAEIVVLSDFWSPLGEIRQMLSGLSSSGAHGSLVQVVDPAEESFPFSGRIEFVEPEGGG AITAGRAETWAADYVALVAAHRDQIRVETGTLDWLFSTHTTSRSAAELLLFLHAGMTTAKGAERGTKTGLGA >Mature_311_residues AQAPEQPNKETLAVRRADGESRTLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFWQYRRFVSGEPATRVDWRRSAR DDHLYVRELEWEAAHTVWLWPDRSASMAYASKGVRDSKLERALIVTFALAELLVAGGERVGIPGLMNPTSNNNVIDRMAQ AILHDTTSRDSLPPSFVPSSLAEIVVLSDFWSPLGEIRQMLSGLSSSGAHGSLVQVVDPAEESFPFSGRIEFVEPEGGGA ITAGRAETWAADYVALVAAHRDQIRVETGTLDWLFSTHTTSRSAAELLLFLHAGMTTAKGAERGTKTGLGA
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34040; Mature: 33908
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQAPEQPNKETLAVRRADGESRTLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFW CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH QYRRFVSGEPATRVDWRRSARDDHLYVRELEWEAAHTVWLWPDRSASMAYASKGVRDSKL HHHHHHCCCCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHCCCCHHHH ERALIVTFALAELLVAGGERVGIPGLMNPTSNNNVIDRMAQAILHDTTSRDSLPPSFVPS HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH SLAEIVVLSDFWSPLGEIRQMLSGLSSSGAHGSLVQVVDPAEESFPFSGRIEFVEPEGGG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCCCCEEEEECCCCCC AITAGRAETWAADYVALVAAHRDQIRVETGTLDWLFSTHTTSRSAAELLLFLHAGMTTAK EEECCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCCC GAERGTKTGLGA CCCCCCCCCCCC >Mature Secondary Structure AQAPEQPNKETLAVRRADGESRTLAASLPRLMLEARRIANNVTHGLHGRRRAGAGENFW CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH QYRRFVSGEPATRVDWRRSARDDHLYVRELEWEAAHTVWLWPDRSASMAYASKGVRDSKL HHHHHHCCCCCCCCHHHHCCCCCCEEEEEEEECCCEEEEEECCCCCCHHHHHCCCCHHHH ERALIVTFALAELLVAGGERVGIPGLMNPTSNNNVIDRMAQAILHDTTSRDSLPPSFVPS HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH SLAEIVVLSDFWSPLGEIRQMLSGLSSSGAHGSLVQVVDPAEESFPFSGRIEFVEPEGGG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCCCCEEEEECCCCCC AITAGRAETWAADYVALVAAHRDQIRVETGTLDWLFSTHTTSRSAAELLLFLHAGMTTAK EEECCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCHHHHHHHHHHHCCCCCCC GAERGTKTGLGA CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA