| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ygfF [C]
Identifier: 86748275
GI number: 86748275
Start: 1321914
End: 1322675
Strand: Direct
Name: ygfF [C]
Synonym: RPB_1150
Alternate gene names: 86748275
Gene position: 1321914-1322675 (Clockwise)
Preceding gene: 86748274
Following gene: 86748276
Centisome position: 24.79
GC content: 69.95
Gene sequence:
>762_bases ATGAAGCCGCTCGCCGACAGGATCGCTCTCGTCACCGGCGCCAGCCGCGGCATCGGGCGCGCGATCGCTGTCCGGCTGGC GCAGGACGGCGCGGTCGTCGGGATCCACTATCGCGCCGAGCGCGACAAGGCCGCCGAGTTGCTCGCGCAGATCCGCAGCG ATGGCGGCGACGGCTTCCTGATCGCAGCCGATCTCGCCGACCCCGCCGGCGCCGTGCAACTCGCCGAAGCGCTGATCGCC GAACTGCGCCGCCGGCGCGATCCGCCGCTGCTCGACATCCTCGTCAACAACGCCGGCATCGACGACCGCAAGACCATCGA GCAGGTCACCGAAGCCGAGTTCGACCGGATGTGGCAGGTCAATTTCAAGTCGCCGTTCTTCCTGATCCAGAAGCTCTTGC CGGTGCTGGCCGATGGCGGCCGCATCATCAACATCTCGTCGATGGCGGCGCGGCTGTCGTTTCCGACCATGCCGGTCTAC GCGCCGACCAAGGCGGCGCTGTCGACGCTGAGCCGCATCCTCGCCGCGCATCTCGGCCCGCGCGGCATCACGGTGAATGC GGTGCTGCCGGGTGCGACGGCGACCGATCTCAACCCTGCCGCGTCCGATCCGCAGCGCGCCGCCGCGCTCCGCGACAGCA TCGCGCTCGGCCGCATCGCGGGGCCAGAGGACATCGCGCCGATCGTCGCCTTCCTCGCCTCGAAGGACGGCGGCTGGATC ACCGGCGAGACCATCGAAGCCAGCGGCGGTCAGCGCCTATGA
Upstream 100 bases:
>100_bases CGTCGCCGATGTCGACGTCCACGACGAGAAGGGCGCGCTGATCGCGATCGGGCGCGCGACCTATGCGATCTGATATCACG AGATCAGCGCCGGAGCCGCG
Downstream 100 bases:
>100_bases GCTATCGATTCGGTCGCGAATGTGTTTCTCCGAAACCGGGTTCGCGCCGGACGATTTCACTCTCTCTCCACGATTTGATG CACATCGATGCTGCGCGCGC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MKPLADRIALVTGASRGIGRAIAVRLAQDGAVVGIHYRAERDKAAELLAQIRSDGGDGFLIAADLADPAGAVQLAEALIA ELRRRRDPPLLDILVNNAGIDDRKTIEQVTEAEFDRMWQVNFKSPFFLIQKLLPVLADGGRIINISSMAARLSFPTMPVY APTKAALSTLSRILAAHLGPRGITVNAVLPGATATDLNPAASDPQRAAALRDSIALGRIAGPEDIAPIVAFLASKDGGWI TGETIEASGGQRL
Sequences:
>Translated_253_residues MKPLADRIALVTGASRGIGRAIAVRLAQDGAVVGIHYRAERDKAAELLAQIRSDGGDGFLIAADLADPAGAVQLAEALIA ELRRRRDPPLLDILVNNAGIDDRKTIEQVTEAEFDRMWQVNFKSPFFLIQKLLPVLADGGRIINISSMAARLSFPTMPVY APTKAALSTLSRILAAHLGPRGITVNAVLPGATATDLNPAASDPQRAAALRDSIALGRIAGPEDIAPIVAFLASKDGGWI TGETIEASGGQRL >Mature_253_residues MKPLADRIALVTGASRGIGRAIAVRLAQDGAVVGIHYRAERDKAAELLAQIRSDGGDGFLIAADLADPAGAVQLAEALIA ELRRRRDPPLLDILVNNAGIDDRKTIEQVTEAEFDRMWQVNFKSPFFLIQKLLPVLADGGRIINISSMAARLSFPTMPVY APTKAALSTLSRILAAHLGPRGITVNAVLPGATATDLNPAASDPQRAAALRDSIALGRIAGPEDIAPIVAFLASKDGGWI TGETIEASGGQRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=34.6456692913386, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=35.9683794466403, Blast_Score=124, Evalue=9e-29, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=35.6862745098039, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=31.2741312741313, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=33.4661354581673, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=36.9458128078818, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=32.9842931937173, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI66933014, Length=171, Percent_Identity=31.5789473684211, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=29.9595141700405, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI20149619, Length=232, Percent_Identity=30.1724137931034, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=205, Percent_Identity=30.2439024390244, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=25.0965250965251, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI59889578, Length=185, Percent_Identity=30.8108108108108, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=34.6613545816733, Blast_Score=137, Evalue=8e-34, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=38.4, Blast_Score=137, Evalue=9e-34, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=32.9365079365079, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=33.59375, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=33.9920948616601, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=31.4741035856574, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=34.136546184739, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=29.6442687747036, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87082100, Length=267, Percent_Identity=30.3370786516854, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=30.7086614173228, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=29.4820717131474, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787526, Length=259, Percent_Identity=31.6602316602317, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789057, Length=265, Percent_Identity=27.9245283018868, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787820, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786701, Length=231, Percent_Identity=30.7359307359307, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=37.8676470588235, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=32.1033210332103, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=32.156862745098, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI193204405, Length=273, Percent_Identity=34.7985347985348, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17565030, Length=268, Percent_Identity=35.4477611940299, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17563726, Length=269, Percent_Identity=32.7137546468402, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17559104, Length=271, Percent_Identity=33.210332103321, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=33.596837944664, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=36.2962962962963, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=33.5793357933579, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=31.3725490196078, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=34.3873517786561, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=32.2222222222222, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=32.2222222222222, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560220, Length=275, Percent_Identity=35.6363636363636, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI72000259, Length=269, Percent_Identity=30.4832713754647, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=33.0882352941176, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=34.1911764705882, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=29.5620437956204, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17551412, Length=274, Percent_Identity=33.2116788321168, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=31.8725099601594, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=29.6, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=27.1653543307087, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=29.6296296296296, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17508895, Length=210, Percent_Identity=29.0476190476191, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71997099, Length=211, Percent_Identity=28.436018957346, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71982365, Length=200, Percent_Identity=31.5, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17561272, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=26.5384615384615, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193207185, Length=147, Percent_Identity=34.0136054421769, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508651, Length=259, Percent_Identity=28.1853281853282, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=237, Percent_Identity=27.8481012658228, Blast_Score=63, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=25.1968503937008, Blast_Score=62, Evalue=7e-11, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=35.2941176470588, Blast_Score=131, Evalue=5e-31, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=36.6935483870968, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=33.976833976834, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=33.2046332046332, Blast_Score=120, Evalue=9e-28, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=31.8897637795276, Blast_Score=114, Evalue=8e-26, Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=29.5719844357977, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=32.03125, Blast_Score=107, Evalue=5e-24, Organism=Drosophila melanogaster, GI24644337, Length=205, Percent_Identity=36.0975609756098, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24640492, Length=228, Percent_Identity=24.5614035087719, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584748, Length=223, Percent_Identity=29.1479820627803, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076933, Length=223, Percent_Identity=29.1479820627803, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281364892, Length=211, Percent_Identity=28.9099526066351, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI28573296, Length=242, Percent_Identity=30.5785123966942, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=28.8557213930348, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24651139, Length=215, Percent_Identity=26.9767441860465, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24649181, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26668; Mature: 26668
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPLADRIALVTGASRGIGRAIAVRLAQDGAVVGIHYRAERDKAAELLAQIRSDGGDGFL CCCHHHHHHHHCCCCCCCCHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEE IAADLADPAGAVQLAEALIAELRRRRDPPLLDILVNNAGIDDRKTIEQVTEAEFDRMWQV EEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEE NFKSPFFLIQKLLPVLADGGRIINISSMAARLSFPTMPVYAPTKAALSTLSRILAAHLGP CCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC RGITVNAVLPGATATDLNPAASDPQRAAALRDSIALGRIAGPEDIAPIVAFLASKDGGWI CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEE TGETIEASGGQRL ECCEEECCCCCCC >Mature Secondary Structure MKPLADRIALVTGASRGIGRAIAVRLAQDGAVVGIHYRAERDKAAELLAQIRSDGGDGFL CCCHHHHHHHHCCCCCCCCHHHHEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEE IAADLADPAGAVQLAEALIAELRRRRDPPLLDILVNNAGIDDRKTIEQVTEAEFDRMWQV EEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEE NFKSPFFLIQKLLPVLADGGRIINISSMAARLSFPTMPVYAPTKAALSTLSRILAAHLGP CCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC RGITVNAVLPGATATDLNPAASDPQRAAALRDSIALGRIAGPEDIAPIVAFLASKDGGWI CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEE TGETIEASGGQRL ECCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]