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The map label for this gene is radC [C]

Identifier: 86747826

GI number: 86747826

Start: 786248

End: 787000

Strand: Direct

Name: radC [C]

Synonym: RPB_0700

Alternate gene names: 86747826

Gene position: 786248-787000 (Clockwise)

Preceding gene: 86747825

Following gene: 86747832

Centisome position: 14.75

GC content: 66.93

Gene sequence:

>753_bases
ATGGTTGATCCGATCAGCAACGCGGCGCCACCTATGCCAGCAGACAGCAGCGAGCGACTGGACCCGCCGGGATTCGCCGA
GGCGCCGCATTATCACGGCCATCGCGAACGGCTGCGCGAGCGGTTTCGCGAGGCCGGCGCCGCCGCGCTCAGCGACTACG
AATTGCTGGAACTCGTGCTGTTTCGCGCGCTGCCGCGCCGCGACGTCAAGCCGCTGGCGAAGGCGCTGATCGCGCGGTTC
GGCTCGTTCGCCGAGACCATGCAGGCGCCCGAGCCACGGCTGCGCGAGGTCTCAGGGCTGGGCGAGGCCGCGATCACCGA
GATCAAGCTGGTCGCGGCGGCGGCGGCGCGGGTCACCAAGGGGCAGGTCAAGAGCCGCACCGTGCTGTCGTCATGGTCGG
CGGTGATCGATTACTGCCGGACCACGATGGCGTTCGCCGACAGGGAGCAGTTCCGCATCCTGTTTCTCGACAAGCGCAAC
CAGCTGATCGCCGACGAACTGCAGCAGGTCGGCACCGTCGACCACACCCCGGTCTATCCGCGCGAGATCGTCAAGCGCGC
GCTCGAACTGTCGGCGACCGCGGTGATCATGGTGCACAACCATCCTTCGGGCGACCCGACGCCGTCGCAGGCCGACATCC
AGATGACCAAGACCATCGTGGCGATCGCCGAACCGCTCGGCGTCGCCGTGCACGATCACATCATCGTCGGCAAGAACGGC
CATGCCAGTCTGAAGGGGCTGAAGCTGTTTTGA

Upstream 100 bases:

>100_bases
TCGAATTCACCATGCGGCGGCTGCCGACGGCGGACTGAGCGCGACCTCCGGAGTTTGGGACAGCCGCCAATTCACGGTTG
CAAAAGGCGTGGCGCGCGGC

Downstream 100 bases:

>100_bases
GGTCGCCGATTTGATTCCGGTCGCAGCTGCTCCGTAGACTGCGTTGCTACACGGATTGAATCGTCATCCTGAGGCGCACG
CCCGTTTGGGCGTGCCTCGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVLFRALPRRDVKPLAKALIARF
GSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSAVIDYCRTTMAFADREQFRILFLDKRN
QLIADELQQVGTVDHTPVYPREIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNG
HASLKGLKLF

Sequences:

>Translated_250_residues
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVLFRALPRRDVKPLAKALIARF
GSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSAVIDYCRTTMAFADREQFRILFLDKRN
QLIADELQQVGTVDHTPVYPREIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNG
HASLKGLKLF
>Mature_250_residues
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVLFRALPRRDVKPLAKALIARF
GSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTKGQVKSRTVLSSWSAVIDYCRTTMAFADREQFRILFLDKRN
QLIADELQQVGTVDHTPVYPREIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNG
HASLKGLKLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=32.0388349514563, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI2367100, Length=109, Percent_Identity=50.4587155963303, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788997, Length=109, Percent_Identity=47.7064220183486, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=45.045045045045, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y700_RHOP2 (Q2J299)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_484322.1
- ProteinModelPortal:   Q2J299
- STRING:   Q2J299
- GeneID:   3908206
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0700
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   RPAL316058:RPB_0700-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 27438; Mature: 27438

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRALPRRDVKPLAKALIARFGSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTK
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GQVKSRTVLSSWSAVIDYCRTTMAFADREQFRILFLDKRNQLIADELQQVGTVDHTPVYP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCH
REIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNG
HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECEEEECCCC
HASLKGLKLF
CCCCCCCCCC
>Mature Secondary Structure
MVDPISNAAPPMPADSSERLDPPGFAEAPHYHGHRERLRERFREAGAAALSDYELLELVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRALPRRDVKPLAKALIARFGSFAETMQAPEPRLREVSGLGEAAITEIKLVAAAAARVTK
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GQVKSRTVLSSWSAVIDYCRTTMAFADREQFRILFLDKRNQLIADELQQVGTVDHTPVYP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCH
REIVKRALELSATAVIMVHNHPSGDPTPSQADIQMTKTIVAIAEPLGVAVHDHIIVGKNG
HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCEEEECEEEECCCC
HASLKGLKLF
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA