Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 86747510

GI number: 86747510

Start: 424683

End: 426362

Strand: Direct

Name: cph2 [H]

Synonym: RPB_0384

Alternate gene names: 86747510

Gene position: 424683-426362 (Clockwise)

Preceding gene: 86747508

Following gene: 86747511

Centisome position: 7.97

GC content: 69.35

Gene sequence:

>1680_bases
ATGTCACGCATCGCCATCATTCGCAAGAAAGCGAAGCTTCGGGGGTTACTCGGAATCCGCGCGCGGCTGGTGATTCTGGC
GCTGATTCTGGTGTGCCCGCTGATGTTCGACCGGGTCCGCCTGCTCGAACACACCCGCAGCAGTGAGATCGCCGCGGTCG
CCGCCACCGCAGCGACGCTGGCGCAGCGCGCCGCCGACGCCCAGCGCGAAGTGATCTCCTCGGTCGAGGCGGTGCTGAAA
TCCGCCGCCTACATCCATGCCGCAGCCGCCCAGGTCGACCGCAGCTGCAGCATTCTGCGCGCCAGTCTGCGGGTCGATCT
GCCGTCGATCCGGATGCTGTCGATCGCGGATGCGCGCGGCATCATTCATTGCTCCACCGCGGCGATGTTCGTCGGCGCCG
ACGTCAGCGAGCGCGCCTATTTCCGCCGGGCGCTGGAGAGCCATGATTTCGTCGTCAGCGATTTCCTGATCGGGGCGCAG
AGCGGCAAGGGCACCATTCTGGCGGCCTATCCGGTGTCGGCGGTGGACGCCGGCGAACAGGCCGTGATGATCGCCGGAAT
GAACCTCGACTGGCTGTCGGACATCATGGCCAATCTCGCCGACCGCGCCGGCGTCAGCGTCGCGCTGATCGACGGCGAGG
GCACCGTGCTCGCCACCCCGCCCGACCAGCGCAGCAAGGTCGGCCAGAAACTCGACCAGGCCACGCTCGACTTCGCCCTC
GGCGCCAATCCGCCGCAGCGGGAGGCGTTGGCAGCTCTGGACGGCACCGGACGGAGGCTGTCGGTCTCGCGGATTCCGGG
CACCAATTCGCGGCTGCTGGTGACGCTCGACGAGAGCGTGGTCGCGGCCGCCATCAACCGCGAGATCCGCACCGCCTATC
TGCAACTGGCGCTGGTGTGCGTGTTCGTGCTGCTCGGCGCGCTGATCGCCGCCGAACGGCTGATCGTGCGGCCGATCTCG
ATGCTGACCTCGACTGCCAAGCGATTCGCCGAAGGCGACTGGTCGGCGCGCGCCGCGCGCGCCCGGCTGCCGTCGGAATT
CGTGCCGCTGGCGCGCGCCTTCAACGCGATGGCCGCGCAACTCGGCCAGCGCGAGCGCGAGCTGGTCGCGATCAACAACA
ACCTCACCGTGATGGCGTCGATGGACATGCTGAGCGGTCTGGCCAACCGGCGCGGCTTCCAGAGCCGGCTGGACTTCGAA
TGGGCGCGCGGCCAGCAGACCGGCCATTGCCTGGCGCTGCTGATGCTCGACGTCGACCATTTCAAGCCGTTCAACGACAG
CTATGGCCATCCGGAGGGCGACGCCTGCCTGTCGCGGATCGGCGAGGCGCTGGCGGGCGTGGCCGACGAGACCGGCGGCT
TCGCCGCGCGCTACGGCGGCGAGGAGTTCTGCCTCCTGTTGCCGAATACCGATGCGGCGGCCGCGCGCGATGTCGGCGAA
TTGGTTCGGGCCACGATCGAGCGACTTGGGGTGCCGCATCGCACCAGCGAGTTTCAGCGCGTCACCGTCAGCGTCGGCGT
CGCGACGGCTCTGCCGGTCGACACCGCGGCGCCGCGCGAACTGCTCGAGGCCGCCGACGCCGCGCTCTACGCCGCCAAAC
ACGGCGGCCGCAACACGGTCGCCGAACACGGCCTGGTCCGCGGCGCCGATGCGCCCGCGCCAATGGCGATGGCGGGCTGA

Upstream 100 bases:

>100_bases
TGCACTCGCAGGTCGTATTTTCATTCAATTTGTAACGAGTTGGAGGAAGGGTTCTTGAACCCTTGGGCCTAGGTTGTTTG
CGGGGGTTGAGGGGGGCACG

Downstream 100 bases:

>100_bases
GGCGGCGCCCGCGCCGGGCCCCGGCCGGACCGCGGAATTGCGCCCATCCCATTGACCCGACGCAGCGTTTCGTGGCCTAT
TCCGCGCGCCTTGCGCGCGA

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MSRIAIIRKKAKLRGLLGIRARLVILALILVCPLMFDRVRLLEHTRSSEIAAVAATAATLAQRAADAQREVISSVEAVLK
SAAYIHAAAAQVDRSCSILRASLRVDLPSIRMLSIADARGIIHCSTAAMFVGADVSERAYFRRALESHDFVVSDFLIGAQ
SGKGTILAAYPVSAVDAGEQAVMIAGMNLDWLSDIMANLADRAGVSVALIDGEGTVLATPPDQRSKVGQKLDQATLDFAL
GANPPQREALAALDGTGRRLSVSRIPGTNSRLLVTLDESVVAAAINREIRTAYLQLALVCVFVLLGALIAAERLIVRPIS
MLTSTAKRFAEGDWSARAARARLPSEFVPLARAFNAMAAQLGQRERELVAINNNLTVMASMDMLSGLANRRGFQSRLDFE
WARGQQTGHCLALLMLDVDHFKPFNDSYGHPEGDACLSRIGEALAGVADETGGFAARYGGEEFCLLLPNTDAAAARDVGE
LVRATIERLGVPHRTSEFQRVTVSVGVATALPVDTAAPRELLEAADAALYAAKHGGRNTVAEHGLVRGADAPAPMAMAG

Sequences:

>Translated_559_residues
MSRIAIIRKKAKLRGLLGIRARLVILALILVCPLMFDRVRLLEHTRSSEIAAVAATAATLAQRAADAQREVISSVEAVLK
SAAYIHAAAAQVDRSCSILRASLRVDLPSIRMLSIADARGIIHCSTAAMFVGADVSERAYFRRALESHDFVVSDFLIGAQ
SGKGTILAAYPVSAVDAGEQAVMIAGMNLDWLSDIMANLADRAGVSVALIDGEGTVLATPPDQRSKVGQKLDQATLDFAL
GANPPQREALAALDGTGRRLSVSRIPGTNSRLLVTLDESVVAAAINREIRTAYLQLALVCVFVLLGALIAAERLIVRPIS
MLTSTAKRFAEGDWSARAARARLPSEFVPLARAFNAMAAQLGQRERELVAINNNLTVMASMDMLSGLANRRGFQSRLDFE
WARGQQTGHCLALLMLDVDHFKPFNDSYGHPEGDACLSRIGEALAGVADETGGFAARYGGEEFCLLLPNTDAAAARDVGE
LVRATIERLGVPHRTSEFQRVTVSVGVATALPVDTAAPRELLEAADAALYAAKHGGRNTVAEHGLVRGADAPAPMAMAG
>Mature_558_residues
SRIAIIRKKAKLRGLLGIRARLVILALILVCPLMFDRVRLLEHTRSSEIAAVAATAATLAQRAADAQREVISSVEAVLKS
AAYIHAAAAQVDRSCSILRASLRVDLPSIRMLSIADARGIIHCSTAAMFVGADVSERAYFRRALESHDFVVSDFLIGAQS
GKGTILAAYPVSAVDAGEQAVMIAGMNLDWLSDIMANLADRAGVSVALIDGEGTVLATPPDQRSKVGQKLDQATLDFALG
ANPPQREALAALDGTGRRLSVSRIPGTNSRLLVTLDESVVAAAINREIRTAYLQLALVCVFVLLGALIAAERLIVRPISM
LTSTAKRFAEGDWSARAARARLPSEFVPLARAFNAMAAQLGQRERELVAINNNLTVMASMDMLSGLANRRGFQSRLDFEW
ARGQQTGHCLALLMLDVDHFKPFNDSYGHPEGDACLSRIGEALAGVADETGGFAARYGGEEFCLLLPNTDAAAARDVGEL
VRATIERLGVPHRTSEFQRVTVSVGVATALPVDTAAPRELLEAADAALYAAKHGGRNTVAEHGLVRGADAPAPMAMAG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=182, Percent_Identity=34.0659340659341, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788956, Length=205, Percent_Identity=31.7073170731707, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=36.4197530864198, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=31.25, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=33.5365853658537, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=32.0224719101124, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=31.7365269461078, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=33.5294117647059, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=32.9268292682927, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=31.2883435582822, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081977, Length=220, Percent_Identity=28.6363636363636, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 59444; Mature: 59313

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRIAIIRKKAKLRGLLGIRARLVILALILVCPLMFDRVRLLEHTRSSEIAAVAATAATL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AQRAADAQREVISSVEAVLKSAAYIHAAAAQVDRSCSILRASLRVDLPSIRMLSIADARG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
IIHCSTAAMFVGADVSERAYFRRALESHDFVVSDFLIGAQSGKGTILAAYPVSAVDAGEQ
EEEECCHHHEECCCHHHHHHHHHHHHCCCEEHHHHHEECCCCCCEEEEECCCHHHCCCCC
AVMIAGMNLDWLSDIMANLADRAGVSVALIDGEGTVLATPPDQRSKVGQKLDQATLDFAL
EEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHC
GANPPQREALAALDGTGRRLSVSRIPGTNSRLLVTLDESVVAAAINREIRTAYLQLALVC
CCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VFVLLGALIAAERLIVRPISMLTSTAKRFAEGDWSARAARARLPSEFVPLARAFNAMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
LGQRERELVAINNNLTVMASMDMLSGLANRRGFQSRLDFEWARGQQTGHCLALLMLDVDH
HCCCCCEEEEECCCEEEEEEHHHHHHHHHCCCCHHHCCCHHHCCCCCCHHHHHHHHHHHH
FKPFNDSYGHPEGDACLSRIGEALAGVADETGGFAARYGGEEFCLLLPNTDAAAARDVGE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHH
LVRATIERLGVPHRTSEFQRVTVSVGVATALPVDTAAPRELLEAADAALYAAKHGGRNTV
HHHHHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AEHGLVRGADAPAPMAMAG
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRIAIIRKKAKLRGLLGIRARLVILALILVCPLMFDRVRLLEHTRSSEIAAVAATAATL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AQRAADAQREVISSVEAVLKSAAYIHAAAAQVDRSCSILRASLRVDLPSIRMLSIADARG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
IIHCSTAAMFVGADVSERAYFRRALESHDFVVSDFLIGAQSGKGTILAAYPVSAVDAGEQ
EEEECCHHHEECCCHHHHHHHHHHHHCCCEEHHHHHEECCCCCCEEEEECCCHHHCCCCC
AVMIAGMNLDWLSDIMANLADRAGVSVALIDGEGTVLATPPDQRSKVGQKLDQATLDFAL
EEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHC
GANPPQREALAALDGTGRRLSVSRIPGTNSRLLVTLDESVVAAAINREIRTAYLQLALVC
CCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VFVLLGALIAAERLIVRPISMLTSTAKRFAEGDWSARAARARLPSEFVPLARAFNAMAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
LGQRERELVAINNNLTVMASMDMLSGLANRRGFQSRLDFEWARGQQTGHCLALLMLDVDH
HCCCCCEEEEECCCEEEEEEHHHHHHHHHCCCCHHHCCCHHHCCCCCCHHHHHHHHHHHH
FKPFNDSYGHPEGDACLSRIGEALAGVADETGGFAARYGGEEFCLLLPNTDAAAARDVGE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHHHHHH
LVRATIERLGVPHRTSEFQRVTVSVGVATALPVDTAAPRELLEAADAALYAAKHGGRNTV
HHHHHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AEHGLVRGADAPAPMAMAG
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]