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The map label for this gene is rimM

Identifier: 86747477

GI number: 86747477

Start: 394275

End: 394823

Strand: Reverse

Name: rimM

Synonym: RPB_0351

Alternate gene names: 86747477

Gene position: 394823-394275 (Counterclockwise)

Preceding gene: 86747478

Following gene: 86747476

Centisome position: 7.41

GC content: 70.86

Gene sequence:

>549_bases
ATGCCGTCCGGGCCGATTTCCGTCGCCCGGCAAGTCTGCGTCGCGCGAATCGGCGCGCCGCACGGCGTGCGCGGCGCGAT
GCGGCTGTGGAGCTTCACCGCCGATCCGCTCGCCGTCGGCGACTACGGCCCGCTGTCGACCAAGGACGGCACACGCTCGT
TCGAGATCGCCACCGCGCGCGCCGCCAAGGATCATCTGGTGGTGACGCTGAAGGGCGTCACCACGCGCGACGAGGCGGTG
CGCCTCAACGGCCTCGAACTGTATGTGCCGCGCGACGCCCTGCCGCCGACCGAGGACGACGAGTACTATCACGCCGACCT
GATCGGCCTGCCGGCGATCACGACGTCCGGCGAGCCGCTCGGCCGCGTGCTGGCGATCCACAATTTCGGCGCCGGCGACA
TCATCGAGATCGCGCCGGCTTCCGGCCCGACGCTGCTGCTGCCGTTCACCAACGCGGTGGTGCCGACGGTCGACCTCGCC
GCCGGGCAGGTGATCATCGAACTGCCCGCCGAGATCGAGGGCGACACGCCGAACCATCCGGAGGCGTGA

Upstream 100 bases:

>100_bases
CGGCGTCAAGAAGCGCGAAGCCCGCAACAATCCCGAAAAGGCGGTGCCGCGCAAGGAGCGCAAGGCCGCCGCCGAAGCCG
CCGCCAAGAAGTAAGCGCGG

Downstream 100 bases:

>100_bases
GGCGCGAGGCGGCATTGTTTCGCGGACGCGTCGCAACACTTATGATCGTCATCGCCGGGCTTGACCCGGCGATCCATCTT
CTTGCGAAGGCGATGGATGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MPSGPISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATARAAKDHLVVTLKGVTTRDEAV
RLNGLELYVPRDALPPTEDDEYYHADLIGLPAITTSGEPLGRVLAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLA
AGQVIIELPAEIEGDTPNHPEA

Sequences:

>Translated_182_residues
MPSGPISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATARAAKDHLVVTLKGVTTRDEAV
RLNGLELYVPRDALPPTEDDEYYHADLIGLPAITTSGEPLGRVLAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLA
AGQVIIELPAEIEGDTPNHPEA
>Mature_181_residues
PSGPISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATARAAKDHLVVTLKGVTTRDEAVR
LNGLELYVPRDALPPTEDDEYYHADLIGLPAITTSGEPLGRVLAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLAA
GQVIIELPAEIEGDTPNHPEA

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=156, Percent_Identity=28.8461538461538, Blast_Score=84, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RHOP2 (Q2J398)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_483973.1
- ProteinModelPortal:   Q2J398
- SMR:   Q2J398
- STRING:   Q2J398
- GeneID:   3908617
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_0351
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   RLWAVRI
- ProtClustDB:   PRK13828
- BioCyc:   RPAL316058:RPB_0351-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19120; Mature: 18989

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSGPISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATAR
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEC
AAKDHLVVTLKGVTTRDEAVRLNGLELYVPRDALPPTEDDEYYHADLIGLPAITTSGEPL
CCCCEEEEEEECCCCCCCEEEECCEEEEECCCCCCCCCCCCEEEEEEEECCEEECCCCCC
GRVLAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLAAGQVIIELPAEIEGDTPNHP
EEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEECCCCEEEEEECCCCCCCCCCCC
EA
CC
>Mature Secondary Structure 
PSGPISVARQVCVARIGAPHGVRGAMRLWSFTADPLAVGDYGPLSTKDGTRSFEIATAR
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEEC
AAKDHLVVTLKGVTTRDEAVRLNGLELYVPRDALPPTEDDEYYHADLIGLPAITTSGEPL
CCCCEEEEEEECCCCCCCEEEECCEEEEECCCCCCCCCCCCEEEEEEEECCEEECCCCCC
GRVLAIHNFGAGDIIEIAPASGPTLLLPFTNAVVPTVDLAAGQVIIELPAEIEGDTPNHP
EEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCCEEECCCCEEEEEECCCCCCCCCCCC
EA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA