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The map label for this gene is ydeL [H]

Identifier: 86747262

GI number: 86747262

Start: 146884

End: 148467

Strand: Direct

Name: ydeL [H]

Synonym: RPB_0135

Alternate gene names: 86747262

Gene position: 146884-148467 (Clockwise)

Preceding gene: 86747254

Following gene: 86747265

Centisome position: 2.75

GC content: 67.3

Gene sequence:

>1584_bases
TTGGGAAAGCTCGCACAGCTCGCTTATCAGGAAGCCGGTCGCAACGGTTCGCTCGATCGTTCGGCAAATGCCTCCGCGAA
TGCCGCATCGTTAGGCAACAGCGATGCGCTGTTCTGGGGCGCCTTATTCCGCGGAATGGATCGCGGCGGGTCGTTTCTGC
AACTGCAGATCCGCCAGATCATCGTCACCGCGATCGAAGACGGCCGGCTGCCGCTCGGGATGCGGATGCCGTCGAGCCGC
GATCTCGCCGCGGTGCTCAAGGTGTCGCGCAACACCGTTGTGATCGCCTACGAGCAGCTGGTCGACCAGAACTTCCTGGT
GTCGCGGCAGCGCAGCGGCTACTTTGTCGCCGGCCTGTCGAAGAAGGTCGCCTCCGGCGCCGGCAAGCCTGCCGAGGCGG
CGAGCCGCGACGATGCGCATTGGGCCGCGCGCTACGCGGTGCAGCCGTCGGCGCATCGCAACATCGTCAAGCCCGCCGAC
TGGCAGGCGCAGCCCTACCCTTTCATCTTCGGGCAGTTCGACCCCAGCCTGTTTCCGACCAACGACTGGCGCGAATCCGC
GCGGGCCGCGCTGAGCGTCCCCGAGATCAACAACTGGGCGCGTGACCTGATCGACGGCGACGACCCGGCGCTGATCGAGC
AGTTGCAGCTTCAGGTGCTGCCGCGCCGCGGCATTCATGCGCGCTCCGACGAAATCATGATGACGATCGGCGCGCAGCAC
GCGCTGTATCTGATCGCGACGCTGTTCATCAACGACCGCACCCGCGTCGGCATCGAGGAGCCCGGCTATCCCGACGCGCG
AAACATCTTCCGGATGCTGACGCCCGACGTCGTCCCGCTCGCCTCCGACGCGCAGGGCCTGTTGCCGGACGAGCGCTTGC
AGAGTTGCGCGCTGGCCTATGTCACCGCCAGCCATCAATGCCCGACCGCGACGGTGATGCCACTGCAGCGGCGACTGGAG
TTGCTCAAGGCCGCCGAGACCGGCGACGTCGTGCTGGTGGAGGACGACTACGAGGGCGAACTGATGCCGGAGGCGGCGAC
GCTGCCGCCGCTGAAGAGCCTCGATCACGCCAGCAACGTGCTCTATGTCGGCAGCCTGTCGAAGGCGCTGGCACCCGGGC
TGCGGCTCGGCTACGTGGTGGCGCCCGCGCCGGTGATCCGCGAGCTGCGGGCGCTGCGGCGGCTGATGCTGCGCCACCCC
CCGCTCAACAACCAGCGCGTCGCCGCATTGTTCATCGGGCTCGGGCACTATCGCTCGCATCTGGCCCAGGTCGGCCGCGT
GCTGCTGGAGCGCGCCAAGATGCTCGACCGCCTGCTGCCGAAACATCTGCCGGACTGCAGCTTCTCGCGCGGACCGGGCA
GCACCAACTACTGGATCGCCTGCCCGCCCGGTACCGACACCACGGCACTGGCGCGGGAAGCGCTGGCGCAGGGCGTGGTA
ATCGAGCCGGGCGCGGTGTTCTCGATGGACGAGACCGCCAGCCGGCATTGCTTCCGGCTCGGCTTCTCCTCGATCCGCAC
CGACCGGATCGAAACAGGCATCCAGCGCCTCGGCGAAGTGATTGCGGAGTATTTGAAGAAGTAG

Upstream 100 bases:

>100_bases
GACTTCTTGCTTCTCAGTTGCAAACAGACATACTCGGATACAGCACTCCACCGGGTCCGCTGTGCCGGCATGGTAGATCG
TCAAGGAAAGTTATAGCGTC

Downstream 100 bases:

>100_bases
TTGCTGCGAGAGGCAGCGCGTCACATCAGTTCGCTGAAGCCCTTGGCGGCGCTGATCAGCGCGATCACGCCGAGGCTGAC
GATCGACACGTGGCGGTGCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 526

Protein sequence:

>527_residues
MGKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGGSFLQLQIRQIIVTAIEDGRLPLGMRMPSSR
DLAAVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAGLSKKVASGAGKPAEAASRDDAHWAARYAVQPSAHRNIVKPAD
WQAQPYPFIFGQFDPSLFPTNDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQH
ALYLIATLFINDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAYVTASHQCPTATVMPLQRRLE
LLKAAETGDVVLVEDDYEGELMPEAATLPPLKSLDHASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHP
PLNNQRVAALFIGLGHYRSHLAQVGRVLLERAKMLDRLLPKHLPDCSFSRGPGSTNYWIACPPGTDTTALAREALAQGVV
IEPGAVFSMDETASRHCFRLGFSSIRTDRIETGIQRLGEVIAEYLKK

Sequences:

>Translated_527_residues
MGKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGGSFLQLQIRQIIVTAIEDGRLPLGMRMPSSR
DLAAVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAGLSKKVASGAGKPAEAASRDDAHWAARYAVQPSAHRNIVKPAD
WQAQPYPFIFGQFDPSLFPTNDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQH
ALYLIATLFINDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAYVTASHQCPTATVMPLQRRLE
LLKAAETGDVVLVEDDYEGELMPEAATLPPLKSLDHASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHP
PLNNQRVAALFIGLGHYRSHLAQVGRVLLERAKMLDRLLPKHLPDCSFSRGPGSTNYWIACPPGTDTTALAREALAQGVV
IEPGAVFSMDETASRHCFRLGFSSIRTDRIETGIQRLGEVIAEYLKK
>Mature_526_residues
GKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGGSFLQLQIRQIIVTAIEDGRLPLGMRMPSSRD
LAAVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAGLSKKVASGAGKPAEAASRDDAHWAARYAVQPSAHRNIVKPADW
QAQPYPFIFGQFDPSLFPTNDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQHA
LYLIATLFINDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAYVTASHQCPTATVMPLQRRLEL
LKAAETGDVVLVEDDYEGELMPEAATLPPLKSLDHASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHPP
LNNQRVAALFIGLGHYRSHLAQVGRVLLERAKMLDRLLPKHLPDCSFSRGPGSTNYWIACPPGTDTTALAREALAQGVVI
EPGAVFSMDETASRHCFRLGFSSIRTDRIETGIQRLGEVIAEYLKK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=358, Percent_Identity=23.7430167597765, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI33469970, Length=358, Percent_Identity=23.7430167597765, Blast_Score=99, Evalue=8e-21,
Organism=Escherichia coli, GI1787710, Length=489, Percent_Identity=27.4028629856851, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1790797, Length=475, Percent_Identity=24.6315789473684, Blast_Score=112, Evalue=6e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 57810; Mature: 57679

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGGSFLQLQIRQI
CCHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHH
IVTAIEDGRLPLGMRMPSSRDLAAVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAGLS
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHCCHHHHCCCCCCEEEECCH
KKVASGAGKPAEAASRDDAHWAARYAVQPSAHRNIVKPADWQAQPYPFIFGQFDPSLFPT
HHHHCCCCCCCHHCCCCCHHHHHHEEECCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCC
NDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQH
CHHHHHHHHEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHH
ALYLIATLFINDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAY
HHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VTASHQCPTATVMPLQRRLELLKAAETGDVVLVEDDYEGELMPEAATLPPLKSLDHASNV
HCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCE
LYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHPPLNNQRVAALFIGLGHYRSH
EEEECCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEHEEHHHHHHHH
LAQVGRVLLERAKMLDRLLPKHLPDCSFSRGPGSTNYWIACPPGTDTTALAREALAQGVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEE
IEPGAVFSMDETASRHCFRLGFSSIRTDRIETGIQRLGEVIAEYLKK
ECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGGSFLQLQIRQI
CHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCEEHHHHHHH
IVTAIEDGRLPLGMRMPSSRDLAAVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAGLS
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHCCHHHHCCCCCCEEEECCH
KKVASGAGKPAEAASRDDAHWAARYAVQPSAHRNIVKPADWQAQPYPFIFGQFDPSLFPT
HHHHCCCCCCCHHCCCCCHHHHHHEEECCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCC
NDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQH
CHHHHHHHHEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHH
ALYLIATLFINDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAY
HHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
VTASHQCPTATVMPLQRRLELLKAAETGDVVLVEDDYEGELMPEAATLPPLKSLDHASNV
HCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCE
LYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHPPLNNQRVAALFIGLGHYRSH
EEEECCHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEHEEHHHHHHHH
LAQVGRVLLERAKMLDRLLPKHLPDCSFSRGPGSTNYWIACPPGTDTTALAREALAQGVV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEE
IEPGAVFSMDETASRHCFRLGFSSIRTDRIETGIQRLGEVIAEYLKK
ECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]