| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is yxiO [H]
Identifier: 86747210
GI number: 86747210
Start: 86769
End: 88157
Strand: Direct
Name: yxiO [H]
Synonym: RPB_0083
Alternate gene names: 86747210
Gene position: 86769-88157 (Clockwise)
Preceding gene: 86747208
Following gene: 86747214
Centisome position: 1.63
GC content: 68.32
Gene sequence:
>1389_bases ATGACGTCATCGACCGCGGCGGACCACTCGCGAGAGAGTGTGCCGAGAACCTATCCGTCGCGCGCCGCGGTCGGCGGCTG GATCCTGTTCGACTGGGCGGCGCAGCCCTATTTCACGCTGATCACCACCTTCATCTTTGCGCCCTATTTCGCCACTTACG TCGCGCCCGATCCCGCCACCGGGCAATCGCTGTGGGGCTTCGCGACGGCGGCGAGCGGGCTGTTGATTGCTTTGGCCTCG CCGATCCTCGGCGCGGTCGCCGATGCGAGCGGCCGGCGCAAGCCGTGGATCGCGGTGTTCGGCGCGATGCTGGTGATCGG CTCGTCACTGATGTGGTTCGGCCGGCCGGGCGATGCCGGCGTGATCCTGCCGCTGCTGATCGCCTACGCGATCGCGACCA TCGGGGTCGAATTCGCCACCGTGTTCAACAACGCGATGATGCCGAACCTGGTGCCGCCGGAGAAAATCGGCCGGCTGTCC GGCACCGGCTGGGCCACCGGCTATGTCGGCGGCATTCTCTCGCTGATTCTCGTGCTCGGCTTCCTCGCCGCCAACCCGCA GACCGGCAAGACGCTGATCGGCGTCACGCCGCTGTTCGGGCTCGACGCGGCGAGCCACGAGGGCGACCGCATCACCGGCC CGCTCACCGGGCTGTGGTTTATGGTGTTCGTGCTGCCGATGTTTCTGCTGACGCCGGATTTTCCGGCCAAGCTGTCGGTG AAGGCGGCGGTCGGCGAGGGCCTGCGCGAATTGCGCGAGACGCTGCGCGACCTGCCGCAGCGGCGCTCGCTCGCCTCCTT CCTGCTCGCCAACATGATCTACACCGACGGGCTCGTCTCGCTGTTCGCCTTCGGCGGCATCTACGCCACCGGCACGTTCG GCTGGGGCACCATCCAGATCGGCAGCTTCGGCGTGATTCTGGCGATCGCCGCGACCTTCGGGGCGTTCATCGGCGGCCGG CTTGACGACGCGCTCGGATCGAAGCGCGTGATCGCCGGATCGATCGTGCTGCTGCTGATCGCGATCAGCGGCATCCTGCT GATCGATCCGTCGCATATCCTGTTCGTCGAGGTGACGCCGCCGCAGCCGGGCGGCGCTCTGTTCGCCGCCCCCGCCGAGC GCGCTTATCTGCTGCTCGGCTGCCTGATCGGCATCGCCGGCGGGCCGCTGCAGGCGGCGTCGCGGACGCTGCTGATCCGC ATCGCCCCGCGCGACCGCATCGCGCAATATTTCGGCCTGTTCGCGCTGACCGGCAAGGTCACGTCGTTCGTCGGCCCGCT GCTGATCGCCACCGTCACCGCCATCACCGCGAGCCAGAAGGCCGGCATGGCGGTGCTGGTGCTGTTCTTCGTCGGCGGCC TGGCGCTGCTGACGCGGGTGCGGAATTAG
Upstream 100 bases:
>100_bases GGTTTCCGACGGTGCAAGTGTTGTGCTGTCCTGCATGCCGGAATCCTATAGTGGTTTCGGCGCGGCGCGCCAAACGCCGG TCGGGAACGAGGAACACAAG
Downstream 100 bases:
>100_bases TTAGAGGCGAAGCATCCCACCAGATAACGACGTCATCGCCCGGCTCGACCGGGCGACCCAGTACGCCGCAGCTTTGCAGA AGGACTGCGGCGCCCTGGAA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MTSSTAADHSRESVPRTYPSRAAVGGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPATGQSLWGFATAASGLLIALAS PILGAVADASGRRKPWIAVFGAMLVIGSSLMWFGRPGDAGVILPLLIAYAIATIGVEFATVFNNAMMPNLVPPEKIGRLS GTGWATGYVGGILSLILVLGFLAANPQTGKTLIGVTPLFGLDAASHEGDRITGPLTGLWFMVFVLPMFLLTPDFPAKLSV KAAVGEGLRELRETLRDLPQRRSLASFLLANMIYTDGLVSLFAFGGIYATGTFGWGTIQIGSFGVILAIAATFGAFIGGR LDDALGSKRVIAGSIVLLLIAISGILLIDPSHILFVEVTPPQPGGALFAAPAERAYLLLGCLIGIAGGPLQAASRTLLIR IAPRDRIAQYFGLFALTGKVTSFVGPLLIATVTAITASQKAGMAVLVLFFVGGLALLTRVRN
Sequences:
>Translated_462_residues MTSSTAADHSRESVPRTYPSRAAVGGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPATGQSLWGFATAASGLLIALAS PILGAVADASGRRKPWIAVFGAMLVIGSSLMWFGRPGDAGVILPLLIAYAIATIGVEFATVFNNAMMPNLVPPEKIGRLS GTGWATGYVGGILSLILVLGFLAANPQTGKTLIGVTPLFGLDAASHEGDRITGPLTGLWFMVFVLPMFLLTPDFPAKLSV KAAVGEGLRELRETLRDLPQRRSLASFLLANMIYTDGLVSLFAFGGIYATGTFGWGTIQIGSFGVILAIAATFGAFIGGR LDDALGSKRVIAGSIVLLLIAISGILLIDPSHILFVEVTPPQPGGALFAAPAERAYLLLGCLIGIAGGPLQAASRTLLIR IAPRDRIAQYFGLFALTGKVTSFVGPLLIATVTAITASQKAGMAVLVLFFVGGLALLTRVRN >Mature_461_residues TSSTAADHSRESVPRTYPSRAAVGGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPATGQSLWGFATAASGLLIALASP ILGAVADASGRRKPWIAVFGAMLVIGSSLMWFGRPGDAGVILPLLIAYAIATIGVEFATVFNNAMMPNLVPPEKIGRLSG TGWATGYVGGILSLILVLGFLAANPQTGKTLIGVTPLFGLDAASHEGDRITGPLTGLWFMVFVLPMFLLTPDFPAKLSVK AAVGEGLRELRETLRDLPQRRSLASFLLANMIYTDGLVSLFAFGGIYATGTFGWGTIQIGSFGVILAIAATFGAFIGGRL DDALGSKRVIAGSIVLLLIAISGILLIDPSHILFVEVTPPQPGGALFAAPAERAYLLLGCLIGIAGGPLQAASRTLLIRI APRDRIAQYFGLFALTGKVTSFVGPLLIATVTAITASQKAGMAVLVLFFVGGLALLTRVRN
Specific function: Unknown
COG id: COG2270
COG function: function code R; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48421; Mature: 48289
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSTAADHSRESVPRTYPSRAAVGGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPAT CCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC GQSLWGFATAASGLLIALASPILGAVADASGRRKPWIAVFGAMLVIGSSLMWFGRPGDAG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC VILPLLIAYAIATIGVEFATVFNNAMMPNLVPPEKIGRLSGTGWATGYVGGILSLILVLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH FLAANPQTGKTLIGVTPLFGLDAASHEGDRITGPLTGLWFMVFVLPMFLLTPDFPAKLSV HHHCCCCCCCEEEEECCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEH KAAVGEGLRELRETLRDLPQRRSLASFLLANMIYTDGLVSLFAFGGIYATGTFGWGTIQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEE GSFGVILAIAATFGAFIGGRLDDALGSKRVIAGSIVLLLIAISGILLIDPSHILFVEVTP CCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEEECC PQPGGALFAAPAERAYLLLGCLIGIAGGPLQAASRTLLIRIAPRDRIAQYFGLFALTGKV CCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH TSFVGPLLIATVTAITASQKAGMAVLVLFFVGGLALLTRVRN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSSTAADHSRESVPRTYPSRAAVGGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPAT CCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC GQSLWGFATAASGLLIALASPILGAVADASGRRKPWIAVFGAMLVIGSSLMWFGRPGDAG CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC VILPLLIAYAIATIGVEFATVFNNAMMPNLVPPEKIGRLSGTGWATGYVGGILSLILVLG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH FLAANPQTGKTLIGVTPLFGLDAASHEGDRITGPLTGLWFMVFVLPMFLLTPDFPAKLSV HHHCCCCCCCEEEEECCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEH KAAVGEGLRELRETLRDLPQRRSLASFLLANMIYTDGLVSLFAFGGIYATGTFGWGTIQI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEE GSFGVILAIAATFGAFIGGRLDDALGSKRVIAGSIVLLLIAISGILLIDPSHILFVEVTP CCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEEECC PQPGGALFAAPAERAYLLLGCLIGIAGGPLQAASRTLLIRIAPRDRIAQYFGLFALTGKV CCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEECCHHHHHHHHHHHHHHHHH TSFVGPLLIATVTAITASQKAGMAVLVLFFVGGLALLTRVRN HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]