| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is phoR [H]
Identifier: 86610220
GI number: 86610220
Start: 2893312
End: 2895972
Strand: Direct
Name: phoR [H]
Synonym: CYB_2795
Alternate gene names: 86610220
Gene position: 2893312-2895972 (Clockwise)
Preceding gene: 86610218
Following gene: 86610221
Centisome position: 94.97
GC content: 56.78
Gene sequence:
>2661_bases ATGGCTTCAACTCGATACCGCCTGGTGCCGGTGCGGCCAGGAGACGGCAGCTTTTATCCAGAGCATCTCTATTTGGCCTT AGAAGCCACCCAACTGGGCTATTGGCAACTGGATCTGCGCACCTGGGAGTTGAGTGCTTCTCCCCAGTGCAAGGCCAAAT ACGGGCTGGATCCCGGCCAAGATTTCACCCTGGAAGTGTTTTTGCAGCACGTTCACCCGGAAGATCGCCAAAGGGTGAAA GAAGCTTTGCAGACGGCTGGGCCCAGGGCGGTAGAGGGGGATCCCAACTTTTCGGTGGAATATCGGGTTTACCAGGCCGA CGGCCAGATGCGCTGGCAGCTTTCCCAGGGGATTGTGCTCTTGGGGCCGAAAGGGGATCCCGGCCAGGTTGTCGGGGTGA CCCTGGATATCAGCGAGCGCAAGCAATTAGAGATCACCTTGGCCGAGCGAGAGCGCCACTATCGCCAGCTCCTGGAAGCC CTGCCCGACATGCTGCTTCGTCTGGATCGCCAGGGCCGATGTCTGGAGTTCAAGCCGCCCAGCTATTTTTCTGTCCCCCA TCCCCCTGCCTACTACCTGGGCAAAACTCCTGAAGAGCTGTTTCCTGAGGTCGCCTGCGCCGGTGCGGCAGAGCCCACAG CCCAAGCCATTCGCGAGCATCTGGAGCTGGCCTTGGCAACCCGGCAAGCTCAAGAGATCGAGTACCCCTGCCCAGAGGGA TCCCCTCAGCCCCAATATCAGCAGGCTCGCATCGCCCCCTATGGGGAAGATCAAGTCCTGATGATCATTAGAAACATCAC CCCTCGTAAGCAAGCCGAGCTGAAGCTGCAGCGGCAATTGCAGCGAGAAAGGCTGTTCAGCCAGCTCATTCAGGCCATCA ACGCCTCGCTCGACTTGCCCACCCTGTTTGATGTGGCAGTCCGGGAAGTGAGGGCAGTGTTACAGGCAGCACGGGTTACC CTTTACCAGTACCTGCCGGCTGAGGCTGTATGGTTAGGTGTTGCCAGCTACGTCCAATCGCCTGATCTGCCCACTGCCCT TCACCTGCACATCCCGGATAGTCCAGACATTGTGGCCATCCAATACTTGAAGCAGCTGCAAGTTTTTCATGCGCCGGATC CCGAGCAAGTTTTGGATCCCTTTGCTATCCATGAAAAGCGAGAATACCACCTGGGCCCTTGGTTGGTGATCCCAGTGGCT TGCCAGGGAAAAGTGTGGGGTGCCCTGGCCCTGCGGCGCCTGATCTCAGATCCGGATTGGCAAACCGACGAGATCGAGCT GGCCAAGGCTATCGGGGAGCACCTGGCGGTGGCCATTCAGCAGGCAGAGCTTTATCAAAAGCTGCAGCAGGCCAATGCTG AATTGGATTACCAAGTGCGGGTGCGCAATGCAGAGCTCGAACAAGCTTACAACGACGAAGCGCTACTCCAGCTCATCACC GAAGAAATTCGCTCCACTTTGGATGAACAAAAAATCTTGGAAACGGTAGCCCGAGAACTGGCCCTGAGCTTGAACCTATC CAATTGCACCATTGCCCTTCATGACCCAGAGCGGCAGGTCAGCGTTTTGGCGGTGGACTATTTGGCCGGAGAAGGGATCC AGCGCTTCCCCCTGGAGGTTTCGTTTGCGGATTTCACCCATGTGCTTCGTCAGCTCCAGCGCGGACAGCTTTGCCAATTG AGCAACTTCCATCACCCCTGCTGGCCCAACCACGACCGCTACACCCTGATCATCGCTCCCATTTGCGACAAAAGGGATCT GACAGCTCAACACGAGGAACTGCTTGTTTTGGGGAATATTTGTGGATCCCGTCCACCGGGGCAGATATTTACCGAGCGGG AACAACGGCTCATCCAACGGGTAGCCGGCCAATGTGCCATCGCCATTCGCCAAGCACGTCTTTATCAAACGATCCAGCGT CAGGTGCAACAGTTGCAGGAGCTCAACCAACTCAAAGATGAGTTTCTGCACATGGTCTCCCACGAAATGCGCACACCTCT CACCAACATGAAGCTGGCTATTGGGTTTCTATCTAAAGCCAACCTAACTGAGCGGGAAAGGCGCTACTTTCAAATTTTGG AGATGGAGACCAACCGCGAGCTGGAGTTAATCAACGACCTGTTGGAATTGCAAGCCCTCGAATCCGGAAACAAAGTCCTC AGACTTACCTGTTTATCTCCCCAGGAATGGATCCCCAATCTTGCCGAGCCCTTCCGGCTGCGGGCTGCGCAGCAAGGCCA ACAGTTCCAGGTGGAATGGGATCCCGACCTTTGGCCCCTCTGCACGGATGAGAGCCTCTTGTCGCGGGTGGTCAGCGAGC TTTTAAACAATGCGTGTAAGTACACCCCCACTGGGGAAAGCATCTATTTAAGTGTGAGCCAGGCTAACTCCAATGGCCGT CCCGGCTGGCTGATCACGGTGCGCAATACAGGGGTGGAAATTCCTGCAGAAGCGTTGCCCCGCCTTTTTGAAAAGTTCTA TCGCCTCCCCCAGTTGGATTGCCGCAACGCCGGGGGAACGGGCTTGGGTCTATCGCTGGTTCAAAAGGCAGTGGAGCTGC TGCAGGGATCCCTGCGGGTGGAAAGCCACTCCCGGCAGGTGGTTGTTCAGGTGTGGTGCCCCCACCAGGGCAGCTTGTCG GAAACCCCAAGCAAGGCTTAG
Upstream 100 bases:
>100_bases CTTAAGGTTAAGAATTTCTAACAGTTCGAATAGTAGGATCTCCCAGGTTCTCTGAAAATTGTCCACAATGAGGCAGGGCT CATAGAATCTGGTGAGGGAG
Downstream 100 bases:
>100_bases AGGGCAAGGCCAGCGCCTTGCGCAGGACTCGAACCTGCAACCATCGACTTAGAAGGTCGGTGCTCTATCCATTGAGCTAG CAAGGCCGAAGAAAAGGGTG
Product: sensory box histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MASTRYRLVPVRPGDGSFYPEHLYLALEATQLGYWQLDLRTWELSASPQCKAKYGLDPGQDFTLEVFLQHVHPEDRQRVK EALQTAGPRAVEGDPNFSVEYRVYQADGQMRWQLSQGIVLLGPKGDPGQVVGVTLDISERKQLEITLAERERHYRQLLEA LPDMLLRLDRQGRCLEFKPPSYFSVPHPPAYYLGKTPEELFPEVACAGAAEPTAQAIREHLELALATRQAQEIEYPCPEG SPQPQYQQARIAPYGEDQVLMIIRNITPRKQAELKLQRQLQRERLFSQLIQAINASLDLPTLFDVAVREVRAVLQAARVT LYQYLPAEAVWLGVASYVQSPDLPTALHLHIPDSPDIVAIQYLKQLQVFHAPDPEQVLDPFAIHEKREYHLGPWLVIPVA CQGKVWGALALRRLISDPDWQTDEIELAKAIGEHLAVAIQQAELYQKLQQANAELDYQVRVRNAELEQAYNDEALLQLIT EEIRSTLDEQKILETVARELALSLNLSNCTIALHDPERQVSVLAVDYLAGEGIQRFPLEVSFADFTHVLRQLQRGQLCQL SNFHHPCWPNHDRYTLIIAPICDKRDLTAQHEELLVLGNICGSRPPGQIFTEREQRLIQRVAGQCAIAIRQARLYQTIQR QVQQLQELNQLKDEFLHMVSHEMRTPLTNMKLAIGFLSKANLTERERRYFQILEMETNRELELINDLLELQALESGNKVL RLTCLSPQEWIPNLAEPFRLRAAQQGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACKYTPTGESIYLSVSQANSNGR PGWLITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGTGLGLSLVQKAVELLQGSLRVESHSRQVVVQVWCPHQGSLS ETPSKA
Sequences:
>Translated_886_residues MASTRYRLVPVRPGDGSFYPEHLYLALEATQLGYWQLDLRTWELSASPQCKAKYGLDPGQDFTLEVFLQHVHPEDRQRVK EALQTAGPRAVEGDPNFSVEYRVYQADGQMRWQLSQGIVLLGPKGDPGQVVGVTLDISERKQLEITLAERERHYRQLLEA LPDMLLRLDRQGRCLEFKPPSYFSVPHPPAYYLGKTPEELFPEVACAGAAEPTAQAIREHLELALATRQAQEIEYPCPEG SPQPQYQQARIAPYGEDQVLMIIRNITPRKQAELKLQRQLQRERLFSQLIQAINASLDLPTLFDVAVREVRAVLQAARVT LYQYLPAEAVWLGVASYVQSPDLPTALHLHIPDSPDIVAIQYLKQLQVFHAPDPEQVLDPFAIHEKREYHLGPWLVIPVA CQGKVWGALALRRLISDPDWQTDEIELAKAIGEHLAVAIQQAELYQKLQQANAELDYQVRVRNAELEQAYNDEALLQLIT EEIRSTLDEQKILETVARELALSLNLSNCTIALHDPERQVSVLAVDYLAGEGIQRFPLEVSFADFTHVLRQLQRGQLCQL SNFHHPCWPNHDRYTLIIAPICDKRDLTAQHEELLVLGNICGSRPPGQIFTEREQRLIQRVAGQCAIAIRQARLYQTIQR QVQQLQELNQLKDEFLHMVSHEMRTPLTNMKLAIGFLSKANLTERERRYFQILEMETNRELELINDLLELQALESGNKVL RLTCLSPQEWIPNLAEPFRLRAAQQGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACKYTPTGESIYLSVSQANSNGR PGWLITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGTGLGLSLVQKAVELLQGSLRVESHSRQVVVQVWCPHQGSLS ETPSKA >Mature_885_residues ASTRYRLVPVRPGDGSFYPEHLYLALEATQLGYWQLDLRTWELSASPQCKAKYGLDPGQDFTLEVFLQHVHPEDRQRVKE ALQTAGPRAVEGDPNFSVEYRVYQADGQMRWQLSQGIVLLGPKGDPGQVVGVTLDISERKQLEITLAERERHYRQLLEAL PDMLLRLDRQGRCLEFKPPSYFSVPHPPAYYLGKTPEELFPEVACAGAAEPTAQAIREHLELALATRQAQEIEYPCPEGS PQPQYQQARIAPYGEDQVLMIIRNITPRKQAELKLQRQLQRERLFSQLIQAINASLDLPTLFDVAVREVRAVLQAARVTL YQYLPAEAVWLGVASYVQSPDLPTALHLHIPDSPDIVAIQYLKQLQVFHAPDPEQVLDPFAIHEKREYHLGPWLVIPVAC QGKVWGALALRRLISDPDWQTDEIELAKAIGEHLAVAIQQAELYQKLQQANAELDYQVRVRNAELEQAYNDEALLQLITE EIRSTLDEQKILETVARELALSLNLSNCTIALHDPERQVSVLAVDYLAGEGIQRFPLEVSFADFTHVLRQLQRGQLCQLS NFHHPCWPNHDRYTLIIAPICDKRDLTAQHEELLVLGNICGSRPPGQIFTEREQRLIQRVAGQCAIAIRQARLYQTIQRQ VQQLQELNQLKDEFLHMVSHEMRTPLTNMKLAIGFLSKANLTERERRYFQILEMETNRELELINDLLELQALESGNKVLR LTCLSPQEWIPNLAEPFRLRAAQQGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACKYTPTGESIYLSVSQANSNGRP GWLITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGTGLGLSLVQKAVELLQGSLRVESHSRQVVVQVWCPHQGSLSE TPSKA
Specific function: Member of the two-component regulatory system phoP/phoR involved in the alkaline phosphatase genes regulation. PhoR may function as a membrane-associated protein kinase that phosphorylates phoP in response to environmental signals [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=221, Percent_Identity=30.316742081448, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI145693157, Length=233, Percent_Identity=30.0429184549356, Blast_Score=97, Evalue=3e-21, Organism=Escherichia coli, GI1790346, Length=239, Percent_Identity=27.1966527196653, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1786783, Length=251, Percent_Identity=25.8964143426295, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1786600, Length=229, Percent_Identity=29.2576419213974, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788393, Length=236, Percent_Identity=26.6949152542373, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1788713, Length=215, Percent_Identity=26.5116279069767, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI48994928, Length=253, Percent_Identity=24.1106719367589, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1790861, Length=228, Percent_Identity=25.8771929824561, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI87081816, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=7e-12, Organism=Escherichia coli, GI1788279, Length=243, Percent_Identity=26.3374485596708, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 100759; Mature: 100628
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTRYRLVPVRPGDGSFYPEHLYLALEATQLGYWQLDLRTWELSASPQCKAKYGLDPGQ CCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCCCCC DFTLEVFLQHVHPEDRQRVKEALQTAGPRAVEGDPNFSVEYRVYQADGQMRWQLSQGIVL CHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEEEEECCCCEEEEEECCEEE LGPKGDPGQVVGVTLDISERKQLEITLAERERHYRQLLEALPDMLLRLDRQGRCLEFKPP ECCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC SYFSVPHPPAYYLGKTPEELFPEVACAGAAEPTAQAIREHLELALATRQAQEIEYPCPEG CCCCCCCCCCHHCCCCHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SPQPQYQQARIAPYGEDQVLMIIRNITPRKQAELKLQRQLQRERLFSQLIQAINASLDLP CCCCCHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TLFDVAVREVRAVLQAARVTLYQYLPAEAVWLGVASYVQSPDLPTALHLHIPDSPDIVAI HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH QYLKQLQVFHAPDPEQVLDPFAIHEKREYHLGPWLVIPVACQGKVWGALALRRLISDPDW HHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCC QTDEIELAKAIGEHLAVAIQQAELYQKLQQANAELDYQVRVRNAELEQAYNDEALLQLIT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCHHHHHHHHH EEIRSTLDEQKILETVARELALSLNLSNCTIALHDPERQVSVLAVDYLAGEGIQRFPLEV HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCEEEEEEEHHHCCCCCCCCCEE SFADFTHVLRQLQRGQLCQLSNFHHPCWPNHDRYTLIIAPICDKRDLTAQHEELLVLGNI EHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHEEEEEHH CGSRPPGQIFTEREQRLIQRVAGQCAIAIRQARLYQTIQRQVQQLQELNQLKDEFLHMVS HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HEMRTPLTNMKLAIGFLSKANLTERERRYFQILEMETNRELELINDLLELQALESGNKVL HHHHCCCCHHHHHEEECCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCEEE RLTCLSPQEWIPNLAEPFRLRAAQQGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACK EEEECCCHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC YTPTGESIYLSVSQANSNGRPGWLITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGT CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GLGLSLVQKAVELLQGSLRVESHSRQVVVQVWCPHQGSLSETPSKA CHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure ASTRYRLVPVRPGDGSFYPEHLYLALEATQLGYWQLDLRTWELSASPQCKAKYGLDPGQ CCCCEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCCCEECCCCCCC DFTLEVFLQHVHPEDRQRVKEALQTAGPRAVEGDPNFSVEYRVYQADGQMRWQLSQGIVL CHHHHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEEEEECCCCEEEEEECCEEE LGPKGDPGQVVGVTLDISERKQLEITLAERERHYRQLLEALPDMLLRLDRQGRCLEFKPP ECCCCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC SYFSVPHPPAYYLGKTPEELFPEVACAGAAEPTAQAIREHLELALATRQAQEIEYPCPEG CCCCCCCCCCHHCCCCHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SPQPQYQQARIAPYGEDQVLMIIRNITPRKQAELKLQRQLQRERLFSQLIQAINASLDLP CCCCCHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TLFDVAVREVRAVLQAARVTLYQYLPAEAVWLGVASYVQSPDLPTALHLHIPDSPDIVAI HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH QYLKQLQVFHAPDPEQVLDPFAIHEKREYHLGPWLVIPVACQGKVWGALALRRLISDPDW HHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCC QTDEIELAKAIGEHLAVAIQQAELYQKLQQANAELDYQVRVRNAELEQAYNDEALLQLIT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCHHHHHHHHH EEIRSTLDEQKILETVARELALSLNLSNCTIALHDPERQVSVLAVDYLAGEGIQRFPLEV HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCEEEEEEEHHHCCCCCCCCCEE SFADFTHVLRQLQRGQLCQLSNFHHPCWPNHDRYTLIIAPICDKRDLTAQHEELLVLGNI EHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHEEEEEHH CGSRPPGQIFTEREQRLIQRVAGQCAIAIRQARLYQTIQRQVQQLQELNQLKDEFLHMVS HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HEMRTPLTNMKLAIGFLSKANLTERERRYFQILEMETNRELELINDLLELQALESGNKVL HHHHCCCCHHHHHEEECCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCEEE RLTCLSPQEWIPNLAEPFRLRAAQQGQQFQVEWDPDLWPLCTDESLLSRVVSELLNNACK EEEECCCHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC YTPTGESIYLSVSQANSNGRPGWLITVRNTGVEIPAEALPRLFEKFYRLPQLDCRNAGGT CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC GLGLSLVQKAVELLQGSLRVESHSRQVVVQVWCPHQGSLSETPSKA CHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3142862; 9387221; 9384377 [H]