Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 86610069

GI number: 86610069

Start: 2729688

End: 2730170

Strand: Direct

Name: yjcF [C]

Synonym: CYB_2641

Alternate gene names: 86610069

Gene position: 2729688-2730170 (Clockwise)

Preceding gene: 86610068

Following gene: 86610070

Centisome position: 89.6

GC content: 59.42

Gene sequence:

>483_bases
TTGTTAAGCTTAACGCACGGATGGCAGTATCCGGCCATGCCCCGAGTGACAACTGCTGACGAGCTGCTGACAGAATATGC
CTCTGGCGAGCGCAACTTTCAAGAATCCAACCTGGTGGGGGTGGACTTGGTGCGCTCCAACTTGCAAGGGGTGAATCTGA
GAGGGGCCAACCTCTCCTTTGGCAAGCTGAGTGGCATTAACCTGCAGGAAGCCGATTTGCGCGGCGCCGATCTCAGCTCG
GCCAACTTGATGGGGGCCAACCTCCGCGGGGCCAATCTTTGGGAAGCCAACTTGATCGGCGCGGATCTCAGCTTTGCCGA
CTTGCGGGAAGCCAACTTGCACGGTGCCTACCTTTGGGAAGCCAAGCTAACCCGTGCACAACTGCAGGGATCCGATCTGA
GCGGGGCAAAAATCGGCGGAGCAGTGCTGACCGGCGCTGACCTCAGGGGGGCCATCCTACCTGACGGGAGTGTGCTGGCT
TGA

Upstream 100 bases:

>100_bases
AAAGCAGAGACGCGACAGGCACTGAACACTCTGGAAGTGTTTGTTAGCGTTTCGTAGGTCTTTCGGAGCGGTCATCAGTA
CCCCGTTGAGCAGCCAGAAA

Downstream 100 bases:

>100_bases
GCCACCCCCCAGCAGACAAGGCAGAATGGAACTGTTGCGACGGGATCCCTGATGTTACTGCTGTTCAACTTGGTCTTGAC
ACTGCTGCTGGCTTTGGGAG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MLSLTHGWQYPAMPRVTTADELLTEYASGERNFQESNLVGVDLVRSNLQGVNLRGANLSFGKLSGINLQEADLRGADLSS
ANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLRGAILPDGSVLA

Sequences:

>Translated_160_residues
MLSLTHGWQYPAMPRVTTADELLTEYASGERNFQESNLVGVDLVRSNLQGVNLRGANLSFGKLSGINLQEADLRGADLSS
ANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLRGAILPDGSVLA
>Mature_160_residues
MLSLTHGWQYPAMPRVTTADELLTEYASGERNFQESNLVGVDLVRSNLQGVNLRGANLSFGKLSGINLQEADLRGADLSS
ANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLRGAILPDGSVLA

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=88, Percent_Identity=39.7727272727273, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI221377802, Length=98, Percent_Identity=43.8775510204082, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 16893; Mature: 16893

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTHGWQYPAMPRVTTADELLTEYASGERNFQESNLVGVDLVRSNLQGVNLRGANLSF
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCCEEECCCCCC
GKLSGINLQEADLRGADLSSANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWE
CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECEEECCCCCHHHHHHCCCCEEEEEE
AKLTRAQLQGSDLSGAKIGGAVLTGADLRGAILPDGSVLA
CHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCC
>Mature Secondary Structure
MLSLTHGWQYPAMPRVTTADELLTEYASGERNFQESNLVGVDLVRSNLQGVNLRGANLSF
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCCCCEEECCCCCC
GKLSGINLQEADLRGADLSSANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWE
CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECEEECCCCCHHHHHHCCCCEEEEEE
AKLTRAQLQGSDLSGAKIGGAVLTGADLRGAILPDGSVLA
CHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]