Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86610005

Identifier: 86610005

GI number: 86610005

Start: 2675267

End: 2675803

Strand: Direct

Name: 86610005

Synonym: CYB_2573

Alternate gene names: NA

Gene position: 2675267-2675803 (Clockwise)

Preceding gene: 86610004

Following gene: 86610008

Centisome position: 87.81

GC content: 59.59

Gene sequence:

>537_bases
GTGCAACCTGAGCTGGTACAGGTGGATCCCGTGCTGCGCTTGCTGCTTTTGGGGGATGGCTTTACCACCCGTAATCTTGC
TGCCTTGATCCAAGAGCCGATTCAGGCTCATCTGCTGGACACGGGCCGGGTTGATTTACAGGCAGAGCAGGGCACTGCCC
CCAAGTCCATGCAACAGCTGGCCAGAGATTTGGGGCGGCTGGGATCCCCTTTGATGCGGCGGCGGGTTTGGCTGTGCGGG
GCAACCTCTCAACAGCCCTTGCTCTATGCCACCTCTTGGTGGAACTCTGAACATTTGGCCCAATACTTGCCCCATCCCGA
TCAGCCCATCGGCCAAAATCTGATCCAAGAAAAACTGGAGACCTTTCGCGAGCTGCGCGGCCTTTACCACGGCGAGGCAG
ACCCGGTTGCCCGGCTGCTGCAGTGTCCCGGTCCCTTCTGGGCTAGGCATTATCTTTTGTTGCACAGGGGCCAGCCTTTG
ACCGTCATCTACGAGGTGTTTTCTCCACGGCTGGCCGCAAGGGCCCTGTCCCGCTAG

Upstream 100 bases:

>100_bases
CGCTACTCTCTGTTCTGCAGATGGCTCTTTGGGGAATGTCTCCTCCGGCCAGGGTGATTGGTGGCCTCTACAACTGCACT
GGCAGGGGGAGGCAGATCCG

Downstream 100 bases:

>100_bases
CGCGACGGAGACCTCCAACGGCGCACGGCTGCGGTGATGGCGGCTGCCACCTGCGGATCCAATTGGGCGCTGGCGGAGAT
GCGCTGATAGTCCTCTGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MQPELVQVDPVLRLLLLGDGFTTRNLAALIQEPIQAHLLDTGRVDLQAEQGTAPKSMQQLARDLGRLGSPLMRRRVWLCG
ATSQQPLLYATSWWNSEHLAQYLPHPDQPIGQNLIQEKLETFRELRGLYHGEADPVARLLQCPGPFWARHYLLLHRGQPL
TVIYEVFSPRLAARALSR

Sequences:

>Translated_178_residues
MQPELVQVDPVLRLLLLGDGFTTRNLAALIQEPIQAHLLDTGRVDLQAEQGTAPKSMQQLARDLGRLGSPLMRRRVWLCG
ATSQQPLLYATSWWNSEHLAQYLPHPDQPIGQNLIQEKLETFRELRGLYHGEADPVARLLQCPGPFWARHYLLLHRGQPL
TVIYEVFSPRLAARALSR
>Mature_178_residues
MQPELVQVDPVLRLLLLGDGFTTRNLAALIQEPIQAHLLDTGRVDLQAEQGTAPKSMQQLARDLGRLGSPLMRRRVWLCG
ATSQQPLLYATSWWNSEHLAQYLPHPDQPIGQNLIQEKLETFRELRGLYHGEADPVARLLQCPGPFWARHYLLLHRGQPL
TVIYEVFSPRLAARALSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20215; Mature: 20215

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPELVQVDPVLRLLLLGDGFTTRNLAALIQEPIQAHLLDTGRVDLQAEQGTAPKSMQQL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
ARDLGRLGSPLMRRRVWLCGATSQQPLLYATSWWNSEHLAQYLPHPDQPIGQNLIQEKLE
HHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHH
TFRELRGLYHGEADPVARLLQCPGPFWARHYLLLHRGQPLTVIYEVFSPRLAARALSR
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure
MQPELVQVDPVLRLLLLGDGFTTRNLAALIQEPIQAHLLDTGRVDLQAEQGTAPKSMQQL
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
ARDLGRLGSPLMRRRVWLCGATSQQPLLYATSWWNSEHLAQYLPHPDQPIGQNLIQEKLE
HHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHH
TFRELRGLYHGEADPVARLLQCPGPFWARHYLLLHRGQPLTVIYEVFSPRLAARALSR
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA