| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609999
Identifier: 86609999
GI number: 86609999
Start: 2670285
End: 2671964
Strand: Direct
Name: 86609999
Synonym: CYB_2566
Alternate gene names: NA
Gene position: 2670285-2671964 (Clockwise)
Preceding gene: 86609998
Following gene: 86610000
Centisome position: 87.65
GC content: 60.48
Gene sequence:
>1680_bases ATGCAGCACAGCTGGATTGCCCCCCAAGATCTCTATCCGTTGATCCCGGTCGAACTGGTGCGTATCGGCGAGATCTTGAT GCTGCATGGGTATCTGGAGCTGGAGCACATCCATCAGGCTCTGATTCAGCAGCGGCAGCACCCGGAGCGCAAGCTGGGGG AGATCTTGGTGCAGCAGGGCTGGGTGCAACCCCACTGGTTGGAATGGGCCTTGGACAAGCAACAGCGGCTGCGGCGCCAG AAAGGAGCTGCCAACAGTTGGGAAGTGATGGTGGAGCAGTGGTCCACCATTCCCGATCAGCCCCCTCTTTATGTCTCCCC TCTACAGGTAGCCCAAGAGACCTACAGAGTTACCCAGCAATACAAAGCCCAGCTGGAGCGCTACCAAGAGCAAATTGCCA TCTTAGAAGCGCAACTGGAGCAGCAGCGGCAGCAGCAACAGCTCCTGGTCGAACAATCGCTGCAGCAGGTTGCCGACCAT CAAGCCCGCCAGCAGGAACAGCAGCAGCGCATTGCCCAATTGGAAGCCCAAATTCAACAGGAGACAGAACAACAAAAGGC TGCCCAACAGCGCATTCGGGAACTGGAGGAGCAACTCCAAGCCCAGCAAACTCAGGGATCCGCGCAACTGCAAGCCGCCC AAGCAGAGCTGGAGACCCTGCGGCGCCGCTGCCACGAGCTGACAGAATGGCAATCTCAAGCCAAACACAAGCTGCAAGAG CTGGGATCCCAACTGCAGGAGCAGCAGAAGATACAGCAGGATCAGGCACAGCAGCTCCAAGAGCAGGCCCACCTGCGTCA TACTCTGCAGCAAATGGAAGCCCAAGTGGCTGCCCTGAACCAGTCGCTGCAGGAGCACCAACACCAACTCCAACTGGCCC AGTCCACGAAACAGCGCTTAACTGCCGACCTGGCCCACGTTCGCCAAGAAGCTGCCGAGGCCACCCACCGCCTGCAAGTG CAGCTCCAAGAAACCCAAGCCCAACTGCGAGAAACTCAAGATCGCTTGCAGCAAGCCCAAGCCCAAGTGAGCCAGCTCCA GGCCCAACTGCAGGCGGCCCAAGCGGAAAACCGTGCTCTAGCCGCAGCGGTAGCCGAAGCCCGACGAACTTCCCCACCTG CAGCCGCACCGACCCCAGCTTCGGAGAAAGCCCGGCCAGAGGCAGAGGATCTCAAGGCCCTGACCGTAGCCGACTGGGCA GCGGAGCTGAGTGCCCCAGAAAGCGAATTGCCCCCGCAGCAGTATTTGGGGGAAGAGGACTTGGAAGCTCTACAGCGGGC TACCCCCTGGGTACAGCGGGTATTGACCCAATTGCGGGCGGCTGGCCTAATCGACAATGCCGGCATCGAAACCGTCATTC ACGCTTGGGAAAAGGAAGGGGGCACCTTCACGGATGTGCTAGCCCACCACAGCGGCCTCAAGCCGGAGACCGTCAAATTT TTCAGCGAAGGGGGCTACTCTGTTCAACTGGCGGGGGGACGCCACGTGGCCGATTACCTCAAGGCTTCTGGGTTGGTCAG CGCCGCCCAAATCGAACAGATCCAGAAGCACCTGCCGCCAGGGGGATCCCTGTGTCAGGCCCTTGCCCAAGCCGGGATTC TACGCCGGGCCACTGCCCTGTATTTCGAGCGCCACTTCGGCGGGCAAAAGCCCCGCCGCCCGCTGCGGGAAGAGCTTTAG
Upstream 100 bases:
>100_bases GGGAGAAGCCCTCAATCGAGCAGGACTGCTCACCCCCGCCCAACTGGCTCAGGCCATGTGGGAAAAGGCCGACAACCCCT TGATGTTGGGGGAGCTGTGT
Downstream 100 bases:
>100_bases AGGAACCATGCTCTATCGCTGACGCCAACGACCGACAAGGGATCCGAATACAGACACAAGCTGCCAACAAGATGCCAATT AGACTAGAAACTAGATAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MQHSWIAPQDLYPLIPVELVRIGEILMLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQRLRRQ KGAANSWEVMVEQWSTIPDQPPLYVSPLQVAQETYRVTQQYKAQLERYQEQIAILEAQLEQQRQQQQLLVEQSLQQVADH QARQQEQQQRIAQLEAQIQQETEQQKAAQQRIRELEEQLQAQQTQGSAQLQAAQAELETLRRRCHELTEWQSQAKHKLQE LGSQLQEQQKIQQDQAQQLQEQAHLRHTLQQMEAQVAALNQSLQEHQHQLQLAQSTKQRLTADLAHVRQEAAEATHRLQV QLQETQAQLRETQDRLQQAQAQVSQLQAQLQAAQAENRALAAAVAEARRTSPPAAAPTPASEKARPEAEDLKALTVADWA AELSAPESELPPQQYLGEEDLEALQRATPWVQRVLTQLRAAGLIDNAGIETVIHAWEKEGGTFTDVLAHHSGLKPETVKF FSEGGYSVQLAGGRHVADYLKASGLVSAAQIEQIQKHLPPGGSLCQALAQAGILRRATALYFERHFGGQKPRRPLREEL
Sequences:
>Translated_559_residues MQHSWIAPQDLYPLIPVELVRIGEILMLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQRLRRQ KGAANSWEVMVEQWSTIPDQPPLYVSPLQVAQETYRVTQQYKAQLERYQEQIAILEAQLEQQRQQQQLLVEQSLQQVADH QARQQEQQQRIAQLEAQIQQETEQQKAAQQRIRELEEQLQAQQTQGSAQLQAAQAELETLRRRCHELTEWQSQAKHKLQE LGSQLQEQQKIQQDQAQQLQEQAHLRHTLQQMEAQVAALNQSLQEHQHQLQLAQSTKQRLTADLAHVRQEAAEATHRLQV QLQETQAQLRETQDRLQQAQAQVSQLQAQLQAAQAENRALAAAVAEARRTSPPAAAPTPASEKARPEAEDLKALTVADWA AELSAPESELPPQQYLGEEDLEALQRATPWVQRVLTQLRAAGLIDNAGIETVIHAWEKEGGTFTDVLAHHSGLKPETVKF FSEGGYSVQLAGGRHVADYLKASGLVSAAQIEQIQKHLPPGGSLCQALAQAGILRRATALYFERHFGGQKPRRPLREEL >Mature_559_residues MQHSWIAPQDLYPLIPVELVRIGEILMLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQRLRRQ KGAANSWEVMVEQWSTIPDQPPLYVSPLQVAQETYRVTQQYKAQLERYQEQIAILEAQLEQQRQQQQLLVEQSLQQVADH QARQQEQQQRIAQLEAQIQQETEQQKAAQQRIRELEEQLQAQQTQGSAQLQAAQAELETLRRRCHELTEWQSQAKHKLQE LGSQLQEQQKIQQDQAQQLQEQAHLRHTLQQMEAQVAALNQSLQEHQHQLQLAQSTKQRLTADLAHVRQEAAEATHRLQV QLQETQAQLRETQDRLQQAQAQVSQLQAQLQAAQAENRALAAAVAEARRTSPPAAAPTPASEKARPEAEDLKALTVADWA AELSAPESELPPQQYLGEEDLEALQRATPWVQRVLTQLRAAGLIDNAGIETVIHAWEKEGGTFTDVLAHHSGLKPETVKF FSEGGYSVQLAGGRHVADYLKASGLVSAAQIEQIQKHLPPGGSLCQALAQAGILRRATALYFERHFGGQKPRRPLREEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63607; Mature: 63607
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00014 ER_TARGET
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHSWIAPQDLYPLIPVELVRIGEILMLHGYLELEHIHQALIQQRQHPERKLGEILVQQG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC WVQPHWLEWALDKQQRLRRQKGAANSWEVMVEQWSTIPDQPPLYVSPLQVAQETYRVTQQ CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHH YKAQLERYQEQIAILEAQLEQQRQQQQLLVEQSLQQVADHQARQQEQQQRIAQLEAQIQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETEQQKAAQQRIRELEEQLQAQQTQGSAQLQAAQAELETLRRRCHELTEWQSQAKHKLQE HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSQLQEQQKIQQDQAQQLQEQAHLRHTLQQMEAQVAALNQSLQEHQHQLQLAQSTKQRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TADLAHVRQEAAEATHRLQVQLQETQAQLRETQDRLQQAQAQVSQLQAQLQAAQAENRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAAVAEARRTSPPAAAPTPASEKARPEAEDLKALTVADWAAELSAPESELPPQQYLGEED HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHH LEALQRATPWVQRVLTQLRAAGLIDNAGIETVIHAWEKEGGTFTDVLAHHSGLKPETVKF HHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH FSEGGYSVQLAGGRHVADYLKASGLVSAAQIEQIQKHLPPGGSLCQALAQAGILRRATAL HHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH YFERHFGGQKPRRPLREEL HHHHHCCCCCCCCCHHHCC >Mature Secondary Structure MQHSWIAPQDLYPLIPVELVRIGEILMLHGYLELEHIHQALIQQRQHPERKLGEILVQQG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC WVQPHWLEWALDKQQRLRRQKGAANSWEVMVEQWSTIPDQPPLYVSPLQVAQETYRVTQQ CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHHH YKAQLERYQEQIAILEAQLEQQRQQQQLLVEQSLQQVADHQARQQEQQQRIAQLEAQIQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ETEQQKAAQQRIRELEEQLQAQQTQGSAQLQAAQAELETLRRRCHELTEWQSQAKHKLQE HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGSQLQEQQKIQQDQAQQLQEQAHLRHTLQQMEAQVAALNQSLQEHQHQLQLAQSTKQRL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TADLAHVRQEAAEATHRLQVQLQETQAQLRETQDRLQQAQAQVSQLQAQLQAAQAENRAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAAVAEARRTSPPAAAPTPASEKARPEAEDLKALTVADWAAELSAPESELPPQQYLGEED HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHH LEALQRATPWVQRVLTQLRAAGLIDNAGIETVIHAWEKEGGTFTDVLAHHSGLKPETVKF HHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH FSEGGYSVQLAGGRHVADYLKASGLVSAAQIEQIQKHLPPGGSLCQALAQAGILRRATAL HHCCCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH YFERHFGGQKPRRPLREEL HHHHHCCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA