Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86609968

Identifier: 86609968

GI number: 86609968

Start: 2638664

End: 2640514

Strand: Direct

Name: 86609968

Synonym: CYB_2534

Alternate gene names: NA

Gene position: 2638664-2640514 (Clockwise)

Preceding gene: 86609965

Following gene: 86609969

Centisome position: 86.61

GC content: 57.1

Gene sequence:

>1851_bases
ATGGGGATCCCAGAGGTTATCATTGCTGCACCTTCTCAACTGAGCCGCCAGCATTTCACAGTGCGGATGCCGGATCCGGC
CAATCACCTGCTGGAGGTGGAACTGCAGATCCAAGAGGTGGATCCAGAGGTGCCTTTGCGGCTGCGACTGCCGGTGTGGA
CGCCGGGATCCTACTTGGTGCGGGAGTATGCCCGTCATGTGCAGGAGTTTCAGGCGGCAACTGAGCAAGGGATCCCTTTG
GCCTGGCGGAAGGTGGACAAGAACACCTGGCAGATCGATCCGCCGGGCTGTTCTGCCGTGAAGGTGTGCTACCGGGTCTA
TGCCTATGAGCTGACGGTGCGCACAAACCATCTGGATTTGACCCACGCCTATTTCAACGGGGCAGCGCTCTTCCTCTACG
TGCCCGGTCGCGAGCGGGAACCCTACACTTTGACGGTGATCCCCCCCAAGCCGGATTGGCACATCGCCACCAGTTTGCGG
CCCTTGACCTCTCCTTCTGAGGATCCCACTTCCGGCCAGTCTTTTGTGGCGGAAGACTACGACGAGCTGGTGGATAGCCC
GGTGGAGGTGGGTCCACATCGAGTGCAATCGTTTGAGGTGGAAGGGATCCCGCATTACCTTGTGGTTTGGGGGTCGGGCA
CTCTGGATGTCGATCGGGCTGTCGCTGATGCTAAGGCGATTGTCAAAACCACAGCCGCGTTTTTCGGTGGGCTACCCTAT
GACCGCTACTGGTTCATTGTGCATTTGTCGCCGGGAGGATTTGGTGGCCTTGAGCACAAGTACAGCACCACCCTTCTTTA
CTCTGGGCTGGAGCTGCATCAGCCGGAGTCCTATCGTCGGTTTTTGTCTTTGCTGGCCCACGAGTTGTTTCATGCCTGGA
ATGTCAAGCGTCTGCGTCCTCTGGCATTGGAAAAGATCGATTACAACCAAGAAAACTATCTGGAATGCCTGTGGTTTTGT
GAGGGAGCGACCAGCTACTACGAAAATGTCATCTTGTTGAGGGCAGGGATCCTCAGTGCCGGCGATTTTTTAAAAGTTCT
TTCCGAACAGATTGGTCGCTTGCAGCGTACTCCGGGCCGGGCCGTGCAATCGCTACGGGAATCCAGCTTCGACACCTGGA
TCAAACTCTACCGCCCCCACGAAAACACCCTCAACAGCCAGGTTTCTTATTACTTAAAAGGGGCTTTGGTCTGTTGGCTG
CTGGATCTGCACATCCGTCACCTTTCCGGCGGTCAGGGATCCCTGGATACGGCTTTGCAGGATCTGTGGCAGCGCTTTGG
TCGGTCAGAGAAGGGCTACAGCGACCAAGACTTGCGGGAGGCGTTTGAGCGGGCAGCCGGTGCCGATCTTGGCCGGTTTT
TCGCAGCCTATGTGGAAGGCACGGAAGAGCTAGACTACAACACTTACCTACACCCCCTTGGCCTCACCCTTAAAGCCCAC
TTCAGCCGCCCCAACCCCATCCCATACCTGGGCCTCAATTTCAACGGCGAGGGCAATCGCATCAGCGCAGTGGAGATGGG
ATCCCCGGCGCAAAAAGCAGGCATCTGGGCCGGCGATGAGCTGGTGGCCCTGGATGGGTTCAGGGTGAGCGCCGCCAACC
TGACAGAACGCTTGACAGCCTATCAGCCCCACCAGATCATTTGTTTGAGCGTTTTTCAAGCGGACCAGTTGAAACACTTT
TGGATCCCGTTGGATCCCCCTCGGCCCGATGTCTACACGTTGGAGGTGTTGCCTGAACTGACTCCTGCTCAAGAAGCTCT
TCAGCAAGGCTGGCTGGGATCCCTTGTCGGCGCCCAGCTTCGGTCAGAGGCAGGTCCCCATCTGCTTGAAAATTCACCTA
TCTCCTCCTAG

Upstream 100 bases:

>100_bases
CCGAAAGCAGGGGTTAGGATAAGAGCCATTGTCGCTGGGGGTTGCGTCGGCCCTTGGCGGTAGAGAGTGGAGTGGGTTGG
AACATTCTATCTACCTATCT

Downstream 100 bases:

>100_bases
CATGTTGAGGCAAGCAGGTAATCAAGCAGGTAATCCAGTTAACTGGAAAGAAAAGTAACAGCAGCAGAGGACAGGAGTAT
CTGATGGACTTAGTTTTGGT

Product: M61 family peptidase

Products: NA

Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 616; Mature: 615

Protein sequence:

>616_residues
MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPL
AWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLR
PLTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY
DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFC
EGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWL
LDLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH
FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHF
WIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS

Sequences:

>Translated_616_residues
MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPL
AWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLR
PLTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY
DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFC
EGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWL
LDLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH
FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHF
WIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS
>Mature_615_residues
GIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPLA
WRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRP
LTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPYD
RYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFCE
GATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLL
DLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAHF
SRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHFW
IPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69406; Mature: 69275

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLV
CCCCCEEEECCHHHCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCHHHHH
REYARHVQEFQAATEQGIPLAWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDL
HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHHEEEEEEEEECCEEE
THAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRPLTSPSEDPTSGQSFVAEDY
EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH
DELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY
HHHHCCCCCCCCCHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRP
CCEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
LALEKIDYNQENYLECLWFCEGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGR
HHHHHCCCCCHHHEEEEEEECCCHHHHHHEHEEHHHHCCCHHHHHHHHHHHHHHHCCCHH
AVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLLDLHIRHLSGGQGSLDTALQ
HHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
DLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH
HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEECCCEEEEEE
FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTA
CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCEEEECCCEEEHHHHHHHHHC
YQPHQIICLSVFQADQLKHFWIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQL
CCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHH
RSEAGPHLLENSPISS
HHCCCCCCCCCCCCCC
>Mature Secondary Structure 
GIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLV
CCCCEEEECCHHHCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCHHHHH
REYARHVQEFQAATEQGIPLAWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDL
HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHHEEEEEEEEECCEEE
THAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRPLTSPSEDPTSGQSFVAEDY
EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH
DELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY
HHHHCCCCCCCCCHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRP
CCEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
LALEKIDYNQENYLECLWFCEGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGR
HHHHHCCCCCHHHEEEEEEECCCHHHHHHEHEEHHHHCCCHHHHHHHHHHHHHHHCCCHH
AVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLLDLHIRHLSGGQGSLDTALQ
HHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
DLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH
HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEECCCEEEEEE
FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTA
CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCEEEECCCEEEHHHHHHHHHC
YQPHQIICLSVFQADQLKHFWIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQL
CCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHH
RSEAGPHLLENSPISS
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA