| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609968
Identifier: 86609968
GI number: 86609968
Start: 2638664
End: 2640514
Strand: Direct
Name: 86609968
Synonym: CYB_2534
Alternate gene names: NA
Gene position: 2638664-2640514 (Clockwise)
Preceding gene: 86609965
Following gene: 86609969
Centisome position: 86.61
GC content: 57.1
Gene sequence:
>1851_bases ATGGGGATCCCAGAGGTTATCATTGCTGCACCTTCTCAACTGAGCCGCCAGCATTTCACAGTGCGGATGCCGGATCCGGC CAATCACCTGCTGGAGGTGGAACTGCAGATCCAAGAGGTGGATCCAGAGGTGCCTTTGCGGCTGCGACTGCCGGTGTGGA CGCCGGGATCCTACTTGGTGCGGGAGTATGCCCGTCATGTGCAGGAGTTTCAGGCGGCAACTGAGCAAGGGATCCCTTTG GCCTGGCGGAAGGTGGACAAGAACACCTGGCAGATCGATCCGCCGGGCTGTTCTGCCGTGAAGGTGTGCTACCGGGTCTA TGCCTATGAGCTGACGGTGCGCACAAACCATCTGGATTTGACCCACGCCTATTTCAACGGGGCAGCGCTCTTCCTCTACG TGCCCGGTCGCGAGCGGGAACCCTACACTTTGACGGTGATCCCCCCCAAGCCGGATTGGCACATCGCCACCAGTTTGCGG CCCTTGACCTCTCCTTCTGAGGATCCCACTTCCGGCCAGTCTTTTGTGGCGGAAGACTACGACGAGCTGGTGGATAGCCC GGTGGAGGTGGGTCCACATCGAGTGCAATCGTTTGAGGTGGAAGGGATCCCGCATTACCTTGTGGTTTGGGGGTCGGGCA CTCTGGATGTCGATCGGGCTGTCGCTGATGCTAAGGCGATTGTCAAAACCACAGCCGCGTTTTTCGGTGGGCTACCCTAT GACCGCTACTGGTTCATTGTGCATTTGTCGCCGGGAGGATTTGGTGGCCTTGAGCACAAGTACAGCACCACCCTTCTTTA CTCTGGGCTGGAGCTGCATCAGCCGGAGTCCTATCGTCGGTTTTTGTCTTTGCTGGCCCACGAGTTGTTTCATGCCTGGA ATGTCAAGCGTCTGCGTCCTCTGGCATTGGAAAAGATCGATTACAACCAAGAAAACTATCTGGAATGCCTGTGGTTTTGT GAGGGAGCGACCAGCTACTACGAAAATGTCATCTTGTTGAGGGCAGGGATCCTCAGTGCCGGCGATTTTTTAAAAGTTCT TTCCGAACAGATTGGTCGCTTGCAGCGTACTCCGGGCCGGGCCGTGCAATCGCTACGGGAATCCAGCTTCGACACCTGGA TCAAACTCTACCGCCCCCACGAAAACACCCTCAACAGCCAGGTTTCTTATTACTTAAAAGGGGCTTTGGTCTGTTGGCTG CTGGATCTGCACATCCGTCACCTTTCCGGCGGTCAGGGATCCCTGGATACGGCTTTGCAGGATCTGTGGCAGCGCTTTGG TCGGTCAGAGAAGGGCTACAGCGACCAAGACTTGCGGGAGGCGTTTGAGCGGGCAGCCGGTGCCGATCTTGGCCGGTTTT TCGCAGCCTATGTGGAAGGCACGGAAGAGCTAGACTACAACACTTACCTACACCCCCTTGGCCTCACCCTTAAAGCCCAC TTCAGCCGCCCCAACCCCATCCCATACCTGGGCCTCAATTTCAACGGCGAGGGCAATCGCATCAGCGCAGTGGAGATGGG ATCCCCGGCGCAAAAAGCAGGCATCTGGGCCGGCGATGAGCTGGTGGCCCTGGATGGGTTCAGGGTGAGCGCCGCCAACC TGACAGAACGCTTGACAGCCTATCAGCCCCACCAGATCATTTGTTTGAGCGTTTTTCAAGCGGACCAGTTGAAACACTTT TGGATCCCGTTGGATCCCCCTCGGCCCGATGTCTACACGTTGGAGGTGTTGCCTGAACTGACTCCTGCTCAAGAAGCTCT TCAGCAAGGCTGGCTGGGATCCCTTGTCGGCGCCCAGCTTCGGTCAGAGGCAGGTCCCCATCTGCTTGAAAATTCACCTA TCTCCTCCTAG
Upstream 100 bases:
>100_bases CCGAAAGCAGGGGTTAGGATAAGAGCCATTGTCGCTGGGGGTTGCGTCGGCCCTTGGCGGTAGAGAGTGGAGTGGGTTGG AACATTCTATCTACCTATCT
Downstream 100 bases:
>100_bases CATGTTGAGGCAAGCAGGTAATCAAGCAGGTAATCCAGTTAACTGGAAAGAAAAGTAACAGCAGCAGAGGACAGGAGTAT CTGATGGACTTAGTTTTGGT
Product: M61 family peptidase
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 616; Mature: 615
Protein sequence:
>616_residues MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPL AWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLR PLTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFC EGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWL LDLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHF WIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS
Sequences:
>Translated_616_residues MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPL AWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLR PLTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFC EGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWL LDLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHF WIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS >Mature_615_residues GIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLVREYARHVQEFQAATEQGIPLA WRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDLTHAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRP LTSPSEDPTSGQSFVAEDYDELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPYD RYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRPLALEKIDYNQENYLECLWFCE GATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGRAVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLL DLHIRHLSGGQGSLDTALQDLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAHF SRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTAYQPHQIICLSVFQADQLKHFW IPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQLRSEAGPHLLENSPISS
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69406; Mature: 69275
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLV CCCCCEEEECCHHHCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCHHHHH REYARHVQEFQAATEQGIPLAWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDL HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHHEEEEEEEEECCEEE THAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRPLTSPSEDPTSGQSFVAEDY EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH DELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY HHHHCCCCCCCCCHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRP CCEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH LALEKIDYNQENYLECLWFCEGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGR HHHHHCCCCCHHHEEEEEEECCCHHHHHHEHEEHHHHCCCHHHHHHHHHHHHHHHCCCHH AVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLLDLHIRHLSGGQGSLDTALQ HHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEECCCEEEEEE FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTA CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCEEEECCCEEEHHHHHHHHHC YQPHQIICLSVFQADQLKHFWIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQL CCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHH RSEAGPHLLENSPISS HHCCCCCCCCCCCCCC >Mature Secondary Structure GIPEVIIAAPSQLSRQHFTVRMPDPANHLLEVELQIQEVDPEVPLRLRLPVWTPGSYLV CCCCEEEECCHHHCCCEEEEECCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCHHHHH REYARHVQEFQAATEQGIPLAWRKVDKNTWQIDPPGCSAVKVCYRVYAYELTVRTNHLDL HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHHEEEEEEEEECCEEE THAYFNGAALFLYVPGREREPYTLTVIPPKPDWHIATSLRPLTSPSEDPTSGQSFVAEDY EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHH DELVDSPVEVGPHRVQSFEVEGIPHYLVVWGSGTLDVDRAVADAKAIVKTTAAFFGGLPY HHHHCCCCCCCCCHHEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC DRYWFIVHLSPGGFGGLEHKYSTTLLYSGLELHQPESYRRFLSLLAHELFHAWNVKRLRP CCEEEEEEECCCCCCCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH LALEKIDYNQENYLECLWFCEGATSYYENVILLRAGILSAGDFLKVLSEQIGRLQRTPGR HHHHHCCCCCHHHEEEEEEECCCHHHHHHEHEEHHHHCCCHHHHHHHHHHHHHHHCCCHH AVQSLRESSFDTWIKLYRPHENTLNSQVSYYLKGALVCWLLDLHIRHLSGGQGSLDTALQ HHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DLWQRFGRSEKGYSDQDLREAFERAAGADLGRFFAAYVEGTEELDYNTYLHPLGLTLKAH HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCEEECCCEEEEEE FSRPNPIPYLGLNFNGEGNRISAVEMGSPAQKAGIWAGDELVALDGFRVSAANLTERLTA CCCCCCCCEEEEEECCCCCEEEEEECCCCHHHCCCCCCCCEEEECCCEEEHHHHHHHHHC YQPHQIICLSVFQADQLKHFWIPLDPPRPDVYTLEVLPELTPAQEALQQGWLGSLVGAQL CCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHH RSEAGPHLLENSPISS HHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA